Evidence map›Paper›PMID 38886407›Full record

ArticleScientific reports2024

Multivariate testing and effect size measures for batch effect evaluation in radiomic features.

Hannah Horng, Christopher Scott, Stacey Winham, Matthew Jensen, Lauren Pantalone, Walter Mankowski, Karla Kerlikowske, Celine M Vachon, Despina Kontos, Russell T Shinohara

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hannah HorngDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA, 19104, USA. hannah.horng@gmail.com.
Christopher ScottMayo Clinic, Rochester, MN, 55905, USA.
Stacey WinhamMayo Clinic, Rochester, MN, 55905, USA.
Matthew JensenMayo Clinic, Rochester, MN, 55905, USA.
Lauren PantaloneDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Walter MankowskiDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Karla KerlikowskeUniversity of California, San Francisco, CA, 94121, USA.
Celine M VachonMayo Clinic, Rochester, MN, 55905, USA.
Despina KontosDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.
Russell T ShinoharaDepartment of Radiology, Center for Biomedical Image Computing and Analysis (CBICA), University of Pennsylvania, Philadelphia, PA, 19104, USA.

Funding

Harmonization of Multi-Site Neuroimaging Data from Complex Study DesignsR01MH123550 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI SHINOHARA, RUSSELL TAKESHI · 2020 to 2025
$4.0M
Radiogenomic Biomarkers of Breast Cancer RecurrenceR01CA223816 · NCI · UNIVERSITY OF PENNSYLVANIA · PI CHODOSH, LEWIS A, KONTOS, DESPINA · 2018 to 2022
$3.1M
Predictive and Diagnostic Radiomic Signatures in Non-Small Cell Lung Cancer (NSCLC)on ImmunotherapyR01CA264835 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KATZ, SHARYN, KONTOS, DESPINA · 2021 to 2025
$2.8M
Multi-parametric 4-D Imaging Biomarkers for Neoadjuvant Treatment ResponseR01CA197000 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KONTOS, DESPINA · 2016 to 2020
$2.4M
NCI NIH HHS R01 CA197000NCI NIH HHS R01 CA223816NCI NIH HHS R01 CA264835NIH HHS R01CA264835-01NIH HHS R01MH123550NIMH NIH HHS R01 MH123550
6 · The paper itself

Abstract

While precision medicine applications of radiomics analysis are promising, differences in image acquisition can cause "batch effects" that reduce reproducibility and affect downstream predictive analyses. Harmonization methods such as ComBat have been developed to correct these effects, but evaluation methods for quantifying batch effects are inconsistent. In this study, we propose the use of the multivariate statistical test PERMANOVA and the Robust Effect Size Index (RESI) to better quantify and characterize batch effects in radiomics data. We evaluate these methods in both simulated and real radiomics features extracted from full-field digital mammography (FFDM) data. PERMANOVA demonstrated higher power than standard univariate statistical testing, and RESI was able to interpretably quantify the effect size of site at extremely large sample sizes. These methods show promise as more powerful and interpretable methods for the detection and quantification of batch effects in radiomics studies.

Indexed as

MammographyBreast NeoplasmsFemaleHumansImage Processing, Computer-AssistedMultivariate AnalysisRadiomicsReproducibility of Results

Identifiers

PMID38886407
PMCPMC11183083

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.