Evidence map›Paper›PMID 38886382›Full record

ArticleNature communications2024

Topoisomerase I is an evolutionarily conserved key regulator for satellite DNA transcription.

Zhen Teng, Lu Yang, Qian Zhang, Yujue Chen, Xianfeng Wang, Yiran Zheng, Aiguo Tian, Di Tian, Zhen Lin, Wu-Min Deng and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Downregulation of Gene Expression by Alpha Satellite Transcripts.International journal of molecular sciences · 2025
    Article
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  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Zhen Teng *Department of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.ORCID http://orcid.org/0000-0002-3827-2197
Lu Yang *Department of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.
Qian Zhang *Department of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.
Yujue ChenDepartment of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.
Xianfeng WangDepartment of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.ORCID http://orcid.org/0000-0001-7207-7865
Yiran ZhengDepartment of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.
Aiguo TianDepartment of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.ORCID http://orcid.org/0000-0001-5011-6034
Di TianDepartment of Pathology & Laboratory Medicine, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.
Zhen LinTulane Cancer Center, Tulane University School of Medicine, New Orleans, LA, 70112, USA.
Wu-Min DengDepartment of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA.ORCID http://orcid.org/0000-0002-9098-9769
Hong LiuDepartment of Biochemistry & Molecular Biology, Tulane University School of Medicine, 1430 Tulane Ave, New Orleans, LA, 70112, USA. hliu22@tulane.edu.ORCID http://orcid.org/0000-0001-5038-3327

Funding

Vitamin D in viral associated lung cancersR01CA261258 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI LIN, ZHEN · 2021 to 2025
$1.9M
Tissue Microenvironment ant Tumor Hotspots in DrosophilaR01CA227789 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI DENG, WU-MIN · 2019 to 2023
$1.7M
Mechanistic investigation of malignant rhabdoid childhood tumor using the Drosophila modelR01CA224381 · NCI · TULANE UNIVERSITY OF LOUISIANA · PI DENG, WU-MIN · 2018 to 2022
$1.7M
Timing Control of Centromeric Cohesion through Centromere-localized Sgo1R01GM124018 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI LIU, HONG · 2018 to 2022
$1.6M
Functions and Regulation of Centromeric TranscriptionR01GM141123 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI LIU, HONG · 2021 to 2024
$1.2M
NCI NIH HHS R01 CA224381NCI NIH HHS R01 CA227789NCI NIH HHS R01 CA261258NIGMS NIH HHS R01 GM124018NIGMS NIH HHS R01 GM141123U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA224381U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA227789U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM124018U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM141123
6 · The paper itself

Abstract

RNA Polymerase (RNAP) II transcription on non-coding repetitive satellite DNAs plays an important role in chromosome segregation, but a little is known about the regulation of satellite transcription. We here show that Topoisomerase I (TopI), not TopII, promotes the transcription of α-satellite DNAs, the main type of satellite DNAs on human centromeres. Mechanistically, TopI localizes to centromeres, binds RNAP II and facilitates RNAP II elongation. Interestingly, in response to DNA double-stranded breaks (DSBs), α-satellite transcription is dramatically stimulated in a DNA damage checkpoint-independent but TopI-dependent manner, and these DSB-induced α-satellite RNAs form into strong speckles in the nucleus. Remarkably, TopI-dependent satellite transcription also exists in mouse 3T3 and Drosophila S2 cells and in Drosophila larval imaginal wing discs and tumor tissues. Altogether, our findings herein reveal an evolutionally conserved mechanism with TopI as a key player for the regulation of satellite transcription at both cellular and animal levels.

Indexed as

CentromereDNA, SatelliteDNA Topoisomerases, Type IRNA Polymerase IITranscription, GeneticAnimalsDNA Breaks, Double-StrandedDrosophilaDrosophila melanogasterEvolution, MolecularHumansMiceDNA, SatelliteDNA Topoisomerases, Type IRNA Polymerase IITOP1 protein, human

Identifiers

PMID38886382
PMCPMC11183047

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.