Evidence map›Paper›PMID 38884588›Full record

ArticleThe Journal of infectious diseases2024

Clinical Presentation of Early Syphilis and Genomic Sequences of Treponema pallidum Strains in Patient Specimens and Isolates Obtained by Rabbit Inoculation.

Ligang Yang, Xiaohui Zhang, Wentao Chen, Arlene C Seña, Heping Zheng, Yinbo Jiang, Peizhen Zhao, Rongyi Chen, Liuyuan Wang, Wujian Ke and 13 more

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. The Regulatory Mechanisms of Treponema pallidum Enolase on Macrophages: From Enzymatic Activity to Signal Transduction.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  3. In vitro isolation of contemporary Treponema pallidum strains directly from clinical samples of syphilis patients.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2025
    Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Ligang YangDermatology Hospital, Southern Medical University.
Xiaohui ZhangDermatology Hospital, Southern Medical University.ORCID 0000-0002-0275-2543
Wentao ChenDermatology Hospital, Southern Medical University.ORCID 0000-0002-4062-3865
Arlene C SeñaInstitute for Global Health and Infectious Diseases, University of North Carolina at Chapel Hill.ORCID 0000-0002-1206-2175
Heping ZhengDermatology Hospital, Southern Medical University.
Yinbo JiangDermatology Hospital, Southern Medical University.
Peizhen ZhaoDermatology Hospital, Southern Medical University.ORCID 0000-0002-9334-3744
Rongyi ChenDermatology Hospital, Southern Medical University.
Liuyuan WangDermatology Hospital, Southern Medical University.
Wujian KeDermatology Hospital, Southern Medical University.
Juan C SalazarDepartment of Pediatrics, UConn School of Medicine, Farmington.
Jonathan B ParrInstitute for Global Health and Infectious Diseases, University of North Carolina at Chapel Hill.
Joseph D TuckerInstitute for Global Health and Infectious Diseases, University of North Carolina at Chapel Hill.
Kelly L HawleyDepartment of Pediatrics, UConn School of Medicine, Farmington.ORCID 0000-0001-8587-1662
Melissa J CaimanoDepartment of Pediatrics, UConn School of Medicine, Farmington.
Christopher M HennellyInstitute for Global Health and Infectious Diseases, University of North Carolina at Chapel Hill.
Farhang AghakanianInstitute for Global Health and Infectious Diseases, University of North Carolina at Chapel Hill.
Everton B BettinDepartment of Pediatrics, UConn School of Medicine, Farmington.
Feifei ZhangDermatology Hospital, Southern Medical University.
Jane S ChenInstitute for Global Health and Infectious Diseases, University of North Carolina at Chapel Hill.ORCID 0000-0001-7648-0651
M Anthony MoodyDepartments of Pediatrics and Integrative Immunobiology, Duke University, Durham, North Carolina.
Justin D RadolfDepartment of Pediatrics, UConn School of Medicine, Farmington.
Bin YangDermatology Hospital, Southern Medical University.

Funding

Prevalence of syphilis and other sexually transmitted infections in men and transgender women who have sex with men in Cali, ColombiaU19AI144177 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI RADOLF, JUSTIN D · 2019 to 2023
$11.2M
INFECTIOUS DISEASE PATHOGENESIS TRAININGT32AI007151 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JULIANO, JONATHAN J · 1985 to 2024
$5.5M
Gates Foundation INV-036560National Institute of Allergy and Infectious Diseases U19AI144177National Institute of Virology and BacteriologyNational Nature Science Foundation of China 82220108006NIAID NIH HHS T32 AI007151NIAID NIH HHS U19 AI144177NIH HHS
6 · The paper itself

Abstract

backgroundThe global resurgence of syphilis necessitates vaccine development.

methodsWe collected ulcer exudates and blood from 17 participants with primary syphilis (PS) and skin biopsies and blood from 51 patients with secondary syphilis (SS) in Guangzhou, China, for Treponema pallidum subsp pallidum (TPA) quantitative polymerase chain reaction, whole genome sequencing (WGS), and isolation of TPA in rabbits.

resultsTPA DNA was detected in 15 of 17 ulcer exudates and 3 of 17 blood PS specimens. TPA DNA was detected in 50 of 51 SS skin biopsies and 27 of 51 blood specimens. TPA was isolated from 47 rabbits with success rates of 71% (12/17) and 69% (35/51), respectively, from ulcer exudates and SS bloods. We obtained paired genomic sequences from 24 clinical samples and corresponding rabbit isolates. Six SS14- and 2 Nichols-clade genome pairs contained rare discordances. Forty-one of the 51 unique TPA genomes clustered within SS14 subgroups largely from East Asia, while 10 fell into Nichols C and E subgroups.

conclusionsOur TPA detection rate was high from PS ulcer exudates and SS skin biopsies and over 50% from SS blood, with TPA isolation in more than two-thirds of samples. Our results support the use of WGS from rabbit isolates to inform vaccine development.

Indexed as

SyphilisTreponema pallidumWhole Genome SequencingAdultAnimalsChinaDNA, BacterialFemaleGenome, BacterialHumansMaleMiddle AgedPhylogenyRabbitsSkinTreponemaDNA, Bacterialchancreearly syphilisgenomic sequencespolA qPCRprimary syphilisrabbit inoculationsecondary syphilisTreponema pallidum

Identifiers

PMID38884588
PMCPMC11646597

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.