Evidence map›Paper›PMID 38879719›Full record

ArticleMolecular psychiatry2024

The single-cell opioid responses in the context of HIV (SCORCH) consortium.

Seth A Ament, Rianne R Campbell, Mary Kay Lobo, Joseph P Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N Byrareddy, Linda Chang, Declan Clarke, Prashant Emani and 67 more

Abstract read
In one paragraph

Article in Molecular psychiatry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  12. Principled PCA separates signal from noise in omics count data.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

77 authors.

Seth A AmentUniversity of Maryland School of Medicine, Baltimore, MD, USA. sament@som.umaryland.edu.ORCID 0000-0001-6443-7509
Rianne R CampbellUniversity of Maryland School of Medicine, Baltimore, MD, USA.
Mary Kay LoboUniversity of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-9419-2079
Joseph P ReceveurUniversity of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-9157-3784
Kriti AgrawalYale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-5778-6118
Alejandra BorjabadIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Siddappa N ByrareddyUniversity of Nebraska Medical Center, Omaha, NE, USA.ORCID 0000-0002-6889-4640
Linda ChangUniversity of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-1267-0699
Declan ClarkeYale School of Medicine, New Haven, CT, USA.
Prashant EmaniYale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-3091-5231
Dana GabuzdaDana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-4964-5083
Kyle J GaultonUniversity of California San Diego, La Jolla, CA, USA.ORCID 0000-0003-1318-7161
Michelle GiglioUniversity of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0001-7628-5565
Federico M GiorgiUniversity of Bologna, Bologna, Italy.
Busra GokBoston University, Boston, MA, USA.ORCID 0000-0002-4473-1273
Chittibabu GudaUniversity of Nebraska Medical Center, Omaha, NE, USA.
Eran HadasIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Brian R HerbUniversity of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-5910-9647
Wen HuWeill Cornell Medicine, New York, NY, USA.ORCID 0000-0002-0604-2119
Anita HuttnerYale School of Medicine, New Haven, CT, USA.
Mohammad R IshmamIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Michelle M JacobsIcahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0009-0003-0950-3237
Jennifer KelschenbachIcahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0009-0007-8555-8378
Dong-Wook KimAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-5497-5853
Cheyu LeeUniversity of California Irvine, Irvine, CA, USA.
Shuhui LiuIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Xiaokun LiuIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Bertha K MadrasMcLean Hospital, Harvard Medical School, Belmont, MA, USA.ORCID 0000-0001-5971-2238
Anup A MahurkarUniversity of Maryland School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-4999-2296
Deborah C MashUniversity of Miami, Miami, FL, USA.
Eran A MukamelUniversity of California San Diego, La Jolla, CA, USA.ORCID 0000-0003-3203-9535
Meng NiuUniversity of Nebraska Medical Center, Omaha, NE, USA.ORCID 0000-0003-1055-3728
Richard M O'ConnorIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Chelsea M PaganAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-3932-9992
Alina P S PangWeill Cornell Medicine, New York, NY, USA.
Piya PillaiIcahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0009-0006-6183-7551
Vez Repunte-CanonigoThe Scripps Research Institute, La Jolla, CA, USA.
W Brad RuzickaMcLean Hospital, Harvard Medical School, Belmont, MA, USA.ORCID 0000-0001-6749-4875
Jay StanleyYale School of Medicine, New Haven, CT, USA.
Timothy TickleBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID 0000-0002-6592-6272
Shang-Yi A TsaiNational Institute on Drug Abuse, Bethesda, MD, USA.
Allen WangUniversity of California San Diego, La Jolla, CA, USA.ORCID 0000-0001-9870-7888
Lauren WillsIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Alyssa M WilsonIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Susan N WrightNational Institute on Drug Abuse, Bethesda, MD, USA.
Siwei XuUniversity of California Irvine, Irvine, CA, USA.ORCID 0000-0002-2828-3706
Junchen YangYale School of Medicine, New Haven, CT, USA.
Maryam ZandUniversity of California San Diego, La Jolla, CA, USA.
Le ZhangYale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-4860-831X
Jing ZhangUniversity of California Irvine, Irvine, CA, USA.
Schahram AkbarianIcahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-7700-0891
Shilpa BuchUniversity of Nebraska Medical Center, Omaha, NE, USA.ORCID 0000-0002-3103-6685
Christine S ChengUniversity of California San Diego, La Jolla, CA, USA.ORCID 0000-0001-5345-8427
Michael J CorleyWeill Cornell Medicine, New York, NY, USA.
Howard S FoxUniversity of Nebraska Medical Center, Omaha, NE, USA.ORCID 0000-0003-2032-374X
Mark GersteinYale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-9746-3719
Suryaram GummuluruBoston University, Boston, MA, USA.ORCID 0000-0002-8606-8481
Myriam HeimanMassachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0002-6365-8673
Ya-Chi HoYale School of Medicine, New Haven, CT, USA.
Manolis KellisMassachusetts Institute of Technology, Cambridge, MA, USA.ORCID 0000-0001-7113-9630
Paul J KennyIcahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-2426-3641
Yuval KlugerYale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-3035-071X
Teresa A MilnerWeill Cornell Medicine, New York, NY, USA.ORCID 0000-0002-0458-6569
David J MooreUniversity of California San Diego, La Jolla, CA, USA.
Susan MorgelloIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Lishomwa C NdhlovuWeill Cornell Medicine, New York, NY, USA.ORCID 0000-0001-5427-4187
Tariq M RanaUniversity of California San Diego, La Jolla, CA, USA.ORCID 0000-0001-9558-5766
Pietro Paolo SannaThe Scripps Research Institute, La Jolla, CA, USA.ORCID 0000-0002-8307-2151
John S SatterleeNational Institute on Drug Abuse, Bethesda, MD, USA.
Nenad SestanYale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-0966-9619
Stephen A SpectorUniversity of California San Diego, La Jolla, CA, USA.
Serena SpudichYale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-6032-3950
Hagen U TilgnerWeill Cornell Medicine, New York, NY, USA.ORCID 0000-0002-7058-3606
David J VolskyIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Owen R WhiteUniversity of Maryland School of Medicine, Baltimore, MD, USA.
Dionne W WilliamsEmory University School of Medicine, Atlanta, GA, USA.ORCID 0000-0001-5029-2628
Hongkui ZengAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-0326-5878

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN JANET LITTLE · 1994 to 2026
$78.4M
Translational ScienceP30AI042853 · NIAID · MIRIAM HOSPITAL · PI CURT G BECKWITH, DEBBIE M. CHENG · 1998 to 2026
$51.7M
Single cell transcriptomic and epigenomic changes during chronic HIV infection and cocaine self-administrationU01DA056003 · NIDA · ALLEN INSTITUTE · PI Paul J. Kenny, DAVID J VOLSKY · 2022 to 2026
$18.2M
The Y-SCORCH Data Generation Center at Yale for Single-Cell Opioid Responses in the Context of HIVUM1DA051410 · NIDA · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, KLUGER, YUVAL · 2020 to 2025
$15.3M
Single Cell Transcriptomic and Epigenomic Dissection of Opioid and Cocaine Responses in HIVU01DA053631 · NIDA · BROAD INSTITUTE, INC. · PI HEIMAN, MYRIAM, KELLIS, MANOLIS · 2021 to 2025
$12.6M
Revealing the single cell determinants of brain relevant to persistent HIV infection and opioid use disorderU01DA053630 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RANA, TARIQ M · 2021 to 2025
$11.2M
Single cell brain transcriptome changes during chronic HIV infection and opiate use in conventional miceU01DA053629 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KENNY, PAUL J., VOLSKY, DAVID J · 2021 to 2025
$11.1M
NeMO Archive: SCORCH Support, Coordination and OutreachUM1DA052244 · NIDA · UNIVERSITY OF MARYLAND BALTIMORE · PI Seth Abrams Ament, Anup Mahurkar · 2020 to 2026
$10.2M
Single cell determinants of brain in the context of viral persistence in SIV/cART/cocaine non-human primatesU01DA058402 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Shilpa J Buch, TARIQ M RANA · 2023 to 2026
$9.9M
M-SCORCH: Methamphetamine use disorder data generation center for Single Cell Opioid Responses in the Context of HIVU01DA053628 · NIDA · YALE UNIVERSITY · PI HO, YA-CHI, SESTAN, NENAD · 2021 to 2025
$9.5M
Elucidating single cell changes in neurogenic brain regions during HIV and cannabinoid exposureU01DA058527 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI Michael Jay Corley, Lishomwa C Ndhlovu · 2023 to 2026
$9.4M
NCATS NIH HHS UL1 TR001863NIAID NIH HHS P30 AI036214NIAID NIH HHS P30 AI042853NIDA NIH HHS DP2 DA056169NIDA NIH HHS R01 DA051889NIDA NIH HHS R01 DA059952NIDA NIH HHS R33 DA047032NIDA NIH HHS R61 DA047032NIDA NIH HHS U01 DA053600NIDA NIH HHS U01 DA053624NIDA NIH HHS U01 DA053625NIDA NIH HHS U01 DA053628NIDA NIH HHS U01 DA053629NIDA NIH HHS U01 DA053630NIDA NIH HHS U01 DA053631NIDA NIH HHS U01 DA056003NIDA NIH HHS U01 DA056004NIDA NIH HHS U01 DA056006NIDA NIH HHS U01 DA058402NIDA NIH HHS U01 DA058527NIDA NIH HHS UM1 DA051410NIDA NIH HHS UM1 DA051411NIDA NIH HHS UM1 DA052244
6 · The paper itself

Abstract

Substance use disorders (SUD) and drug addiction are major threats to public health, impacting not only the millions of individuals struggling with SUD, but also surrounding families and communities. One of the seminal challenges in treating and studying addiction in human populations is the high prevalence of co-morbid conditions, including an increased risk of contracting a human immunodeficiency virus (HIV) infection. Of the ~15 million people who inject drugs globally, 17% are persons with HIV. Conversely, HIV is a risk factor for SUD because chronic pain syndromes, often encountered in persons with HIV, can lead to an increased use of opioid pain medications that in turn can increase the risk for opioid addiction. We hypothesize that SUD and HIV exert shared effects on brain cell types, including adaptations related to neuroplasticity, neurodegeneration, and neuroinflammation. Basic research is needed to refine our understanding of these affected cell types and adaptations. Studying the effects of SUD in the context of HIV at the single-cell level represents a compelling strategy to understand the reciprocal interactions among both conditions, made feasible by the availability of large, extensively-phenotyped human brain tissue collections that have been amassed by the Neuro-HIV research community. In addition, sophisticated animal models that have been developed for both conditions provide a means to precisely evaluate specific exposures and stages of disease. We propose that single-cell genomics is a uniquely powerful technology to characterize the effects of SUD and HIV in the brain, integrating data from human cohorts and animal models. We have formed the Single-Cell Opioid Responses in the Context of HIV (SCORCH) consortium to carry out this strategy.

Indexed as

Analgesics, OpioidBrainHIV InfectionsOpioid-Related DisordersAnimalsComorbidityHumansSingle-Cell AnalysisAnalgesics, Opioid

Identifiers

PMID38879719
PMCPMC11609103

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.