Evidence map›Paper›PMID 38879716›Full record

ArticleArchives of virology2024

A proposed update of African swine fever virus (genotype II) subgenotyping based on the central variable region (CVR) of Russian isolates.

Roman Chernyshev, Alexey Igolkin, Antoinette van Schalkwyk, Nikolay Zinyakov, Ivan Kolbin, Andrey Shotin, Fedor Korennoy, Alexander Sprygin, Ali Mazloum

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Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Roman ChernyshevFederal Center for Animal Health, 600901, Vladimir, Russia.
Alexey IgolkinFederal Center for Animal Health, 600901, Vladimir, Russia.
Antoinette van SchalkwykAgricultural Research Council-Onderstepoort Veterinary Institute, 100 Old Soutpan Road, 0110, Onderstepoort, South Africa.
Nikolay ZinyakovFederal Center for Animal Health, 600901, Vladimir, Russia.
Ivan KolbinFederal Center for Animal Health, 600901, Vladimir, Russia.
Andrey ShotinFederal Center for Animal Health, 600901, Vladimir, Russia.
Fedor KorennoyFederal Center for Animal Health, 600901, Vladimir, Russia.
Alexander SpryginFederal Center for Animal Health, 600901, Vladimir, Russia.
Ali MazloumFederal Center for Animal Health, 600901, Vladimir, Russia. ali.mazloum6@gmail.com.ORCID http://orcid.org/0000-0002-5982-8393

Funding

Ministry of Science and Higher Education of the Russian Federation 075-15-2021-1054
6 · The paper itself

Abstract

African swine fever virus (ASFV) isolates are grouped and tracked through analysis of their central variable region (CVR) sequences. In this study, sequences of 70 ASFV isolates collected from different regions of Russia between 2018 and 2022 were analyzed. The analysis based on the CVR sequences indicated that the isolates belonged to three distinct groups. Group 1 shared 100% sequence identity to the isolate Georgia 2007/1. Group 5 had a C > A single-nucleotide polymorphism (SNP) at position 601, while group 13 is new and unique to the Far East of Russia, with five isolates from the Amur, Khabarovsk, and Primorsky regions. These findings demonstrate a new approach to phylogenomics and cladistics of ASFV isolates within genotype II on the basis of the CVR.

Indexed as

African Swine FeverAfrican Swine Fever VirusGenotypePhylogenyAnimalsPolymorphism, Single NucleotideRussiaSwine

Identifiers

PMID38879716

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