Evidence map›Paper›PMID 38879612›Full record

ArticleNature communications2024

Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.

Diego E Sastre, Nazneen Sultana, Marcos V A S Navarro, Maros Huliciak, Jonathan Du, Javier O Cifuente, Maria Flowers, Xu Liu, Pete Lollar, Beatriz Trastoy and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Crystal structure of endo-β-N-acetylglucosaminidase HSα.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  6. Review
  7. Exploring the Activity of a NovelInternational journal of molecular sciences · 2025
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Combined Inhibition of Thrombosis byInternational journal of general medicine · 2025
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Diego E SastreDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA. dsastre@emory.edu.ORCID http://orcid.org/0000-0003-2010-5398
Nazneen SultanaDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.
Marcos V A S NavarroInstitute of Physics (IFSC-USP), University of São Paulo, São Carlos, SP, Brazil.
Maros HuliciakDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-9929-3522
Jonathan DuDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.
Javier O CifuenteInstituto Biofisika (UPV/EHU, CSIC), University of the Basque Country, Leioa, Spain.ORCID http://orcid.org/0000-0001-5420-121X
Maria FlowersDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.ORCID http://orcid.org/0000-0002-1814-7049
Xu LiuDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.
Pete LollarDepartment of Pediatrics, Emory University School of Medicine, Atlanta, GA, USA.
Beatriz TrastoyStructural Glycoimmunology Laboratory, Biobizkaia Health Research Institute, Barakaldo, Bizkaia, Spain.ORCID http://orcid.org/0000-0002-2178-732X
Marcelo E GuerinStructural Glycobiology Laboratory, Department of Structural and Molecular Biology, Molecular Biology Institute of Barcelona (IBMB), Spanish National Research Council (CSIC), Barcelona Science Park, c/Baldiri Reixac 4-8, Tower R, Barcelona, Catalonia, Spain.ORCID http://orcid.org/0000-0001-9524-3184
Eric J SundbergDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA. eric.sundberg@emory.edu.ORCID http://orcid.org/0000-0003-0478-3033

Funding

Training and OutreachP30GM124166 · NIGMS · CORNELL UNIVERSITY · PI RICHARD A. CERIONE · 2019 to 2026
$28.3M
Gatekeeping glycan metabolism in the human gut microbiomeR01GM148075 · NIGMS · EMORY UNIVERSITY · PI ERIC JOHN SUNDBERG · 2023 to 2026
$1.7M
NIGMS NIH HHS P30 GM124166NIGMS NIH HHS R01 GM148075U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM148075
6 · The paper itself

Abstract

Bacteroidales (syn. Bacteroidetes) are prominent members of the human gastrointestinal ecosystem mainly due to their efficient glycan-degrading machinery, organized into gene clusters known as polysaccharide utilization loci (PULs). A single PUL was reported for catabolism of high-mannose (HM) N-glycan glyco-polypeptides in the gut symbiont Bacteroides thetaiotaomicron, encoding a surface endo-β-N-acetylglucosaminidase (ENGase), BT3987. Here, we discover an ENGase from the GH18 family in B. thetaiotaomicron, BT1285, encoded in a distinct PUL with its own repertoire of proteins for catabolism of the same HM N-glycan substrate as that of BT3987. We employ X-ray crystallography, electron microscopy, mass spectrometry-based activity measurements, alanine scanning mutagenesis and a broad range of biophysical methods to comprehensively define the molecular mechanism by which BT1285 recognizes and hydrolyzes HM N-glycans, revealing that the stabilities and activities of BT1285 and BT3987 were optimal in markedly different conditions. BT1285 exhibits significantly higher affinity and faster hydrolysis of poorly accessible HM N-glycans than does BT3987. We also find that two HM-processing endoglycosidases from the human gut-resident Alistipes finegoldii display condition-specific functional properties. Altogether, our data suggest that human gut microbes employ evolutionary strategies to express distinct ENGases in order to optimally metabolize the same N-glycan substrate in the gastroinstestinal tract.

Indexed as

Bacterial ProteinsBacteroides thetaiotaomicronGastrointestinal MicrobiomePolysaccharidesCrystallography, X-RayGlycoside HydrolasesHumansMannoseMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidaseMultigene FamilySubstrate SpecificityBacterial ProteinsGlycoside HydrolasesMannoseMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidasePolysaccharides

Identifiers

PMID38879612
PMCPMC11180146

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.