Evidence map›Paper›PMID 38877563›Full record

ArticleBMC medical informatics and decision making2024

Collaborative learning from distributed data with differentially private synthetic data.

Lukas Prediger, Joonas Jälkö, Antti Honkela, Samuel Kaski

Abstract read
In one paragraph

Article in BMC medical informatics and decision making, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Lukas PredigerAalto University, Espoo, 00076, Finland. lukas.m.prediger@aalto.fi.
Joonas JälköAalto University, Espoo, 00076, Finland.
Antti HonkelaUniversity of Helsinki, Helsinki, 00014, Finland.
Samuel KaskiAalto University, Espoo, 00076, Finland.

Funding

European Union Project 101070617Research Council of Finland 325572Research Council of Finland 325573Strategic Research Council (SRC) established within the Research Council of Finland 336032UK Research and Innovation EP/W002973/1
6 · The paper itself

Abstract

backgroundConsider a setting where multiple parties holding sensitive data aim to collaboratively learn population level statistics, but pooling the sensitive data sets is not possible due to privacy concerns and parties are unable to engage in centrally coordinated joint computation. We study the feasibility of combining privacy preserving synthetic data sets in place of the original data for collaborative learning on real-world health data from the UK Biobank.

methodsWe perform an empirical evaluation based on an existing prospective cohort study from the literature. Multiple parties were simulated by splitting the UK Biobank cohort along assessment centers, for which we generate synthetic data using differentially private generative modelling techniques. We then apply the original study's Poisson regression analysis on the combined synthetic data sets and evaluate the effects of 1) the size of local data set, 2) the number of participating parties, and 3) local shifts in distributions, on the obtained likelihood scores.

resultsWe discover that parties engaging in the collaborative learning via shared synthetic data obtain more accurate estimates of the regression parameters compared to using only their local data. This finding extends to the difficult case of small heterogeneous data sets. Furthermore, the more parties participate, the larger and more consistent the improvements become up to a certain limit. Finally, we find that data sharing can especially help parties whose data contain underrepresented groups to perform better-adjusted analysis for said groups.

conclusionsBased on our results we conclude that sharing of synthetic data is a viable method for enabling learning from sensitive data without violating privacy constraints even if individual data sets are small or do not represent the overall population well. Lack of access to distributed sensitive data is often a bottleneck in biomedical research, which our study shows can be alleviated with privacy-preserving collaborative learning methods.

Indexed as

Information DisseminationBiological Specimen BanksConfidentialityCooperative BehaviorHumansPrivacyProspective StudiesUnited KingdomCollaborative learningDifferential privacyHealth informaticsSynthetic data

Identifiers

PMID38877563
PMCPMC11179391

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.