Evidence map›Paper›PMID 38877416›Full record

ArticleBMC genomic data2024

Implications of accounting for marker-based population structure in the quantitative genetic evaluation of genetic parameters related to growth and wood properties in Norway spruce.

Haleh Hayatgheibi, Henrik R Hallingbäck, Sven-Olof Lundqvist, Thomas Grahn, Gerhard Scheepers, Peter Nordström, Zhi-Qiang Chen, Katri Kärkkäinen, Harry X Wu, M Rosario García-Gil

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In one paragraph

Article in BMC genomic data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Haleh HayatgheibiDepartment of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden. haleh.hayatgheibi@slu.se.
Henrik R HallingbäckForestry Research Institute Sweden (Skogforsk), 75183, Uppsala, Sweden.
Sven-Olof LundqvistIIC, Stockholm, Sweden.
Thomas GrahnRISE AB, Stockholm, Sweden.
Gerhard ScheepersRISE AB, Växjö, Sweden.
Peter NordströmRISE AB, Umeå, Sweden.
Zhi-Qiang ChenDepartment of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden.
Katri KärkkäinenNatural Resources Institute Finland (LUKE), OULU, Finland.
Harry X WuDepartment of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden.
M Rosario García-GilDepartment of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences (SLU), Umeå, Sweden.

Funding

Assess4est Forestvalue_JC2021_JES_087
6 · The paper itself

Abstract

backgroundForest geneticists typically use provenances to account for population differences in their improvement schemes; however, the historical records of the imported materials might not be very precise or well-aligned with the genetic clusters derived from advanced molecular techniques. The main objective of this study was to assess the impact of marker-based population structure on genetic parameter estimates related to growth and wood properties and their trade-offs in Norway spruce, by either incorporating it as a fixed effect (model-A) or excluding it entirely from the analysis (model-B).

resultsOur results indicate that models incorporating population structure significantly reduce estimates of additive genetic variance, resulting in substantial reduction of narrow-sense heritability. However, these models considerably improve prediction accuracies. This was particularly significant for growth and solid-wood properties, which showed to have the highest population genetic differentiation (Q

conclusionWe conclude that the results of models properly accounting for population structure are more accurate and less biased compared to those neglecting this effect. This might have practical implications for breeders and forest managers where, decisions based on imprecise selections can pose a high risk to economic efficiency.

Indexed as

PiceaWoodGenetic MarkersGenetics, PopulationGenetic VariationModels, GeneticGenetic MarkersCross-validationNorway sprucePopulation structurePrediction accuracyWood properties

Identifiers

PMID38877416
PMCPMC11177499

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.