Evidence map›Paper›PMID 38877407›Full record

ArticleBMC genomics2024

Identification of key genes for triacylglycerol biosynthesis and storage in herbaceous peony (Paeonia lactifolra Pall.) seeds based on full-length transcriptome.

Huajie Xu, Miao Li, Di Ma, Jiajun Gao, Jun Tao, Jiasong Meng

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Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Huajie XuCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, China.
Miao LiCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, China.
Di MaCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, China.
Jiajun GaoCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, China.
Jun TaoCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, China.
Jiasong MengCollege of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, China. jsmeng@yzu.edu.cn.

Funding

National Natural Science Foundation of China 32071813Postgraduate Research & Practice Innovation Program of Jiangsu Province KYCX23_3583
6 · The paper itself

Abstract

backgroundThe herbaceous peony (Paeonia lactiflora Pall.) is extensively cultivated in China due to its root being used as a traditional Chinese medicine known as 'Radix Paeoniae Alba'. In recent years, it has been discovered that its seeds incorporate abundant unsaturated fatty acids, thereby presenting a potential new oilseed plant. Surprisingly, little is known about the full-length transcriptome sequencing of Paeonia lactiflora, limiting research into its gene function and molecular mechanisms.

resultsA total of 484,931 Reads of Inserts (ROI) sequences and 1,455,771 full-Length non-chimeric reads (FLNC) sequences were obtained for CDS prediction, TF analysis, SSR analysis and lncRNA identification. In addition, gene function annotation and gene structure analysis were performed. A total of 4905 transcripts were related to lipid metabolism biosynthesis pathway, belonging to 28 enzymes. We use these data to identify 10 oleosin (OLE) and 5 diacylglycerol acyltransferase (DGAT) gene members after de-redundancy. The analysis of physicochemical properties and secondary structure showed them similarity in gene family respectively. The phylogenetic analysis showed that the distribution of OLE and DGAT family members was roughly the same as that of Arabidopsis. Quantitative real-time polymerase chain reaction (qRT-PCR) analyses revealed expression changes in different seed development stages, and showed a trend of increasing and then decreasing.

conclusionIn summary, these results provide new insights into the molecular mechanism of triacylglycerol (TAG) biosynthesis and storage during the seedling stage in Paeonia lactiflora. It provides theoretical references for selecting and breeding oil varieties and understanding the functions of oil storage as well as lipid synthesis related genes in Paeonia lactiflora.

Indexed as

PaeoniaSeedsTranscriptomeTriglyceridesDiacylglycerol O-AcyltransferaseGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantLipid MetabolismPhylogenyPlant ProteinsDiacylglycerol O-AcyltransferasePlant ProteinsTriglyceridesDiacylglycerol acyltransferaseFull-length transcriptomeOleosinPacBio Iso-SeqPaeonia lactiflora ‘Hangshao’Triacylglycerol

Identifiers

PMID38877407
PMCPMC11179206

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