Evidence map›Paper›PMID 38875556›Full record

ArticleJMIR AI2023

Extraction of Radiological Characteristics From Free-Text Imaging Reports Using Natural Language Processing Among Patients With Ischemic and Hemorrhagic Stroke: Algorithm Development and Validation.

Enshuo Hsu, Abdulaziz T Bako, Thomas Potter, Alan P Pan, Gavin W Britz, Jonika Tannous, Farhaan S Vahidy

Abstract read
In one paragraph

Article in JMIR AI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Enshuo HsuCenter for Health Data Science and Analytics, Houston Methodist Research Institute, Houston, TX, United States.ORCID https://orcid.org/0000-0002-8137-0171
Abdulaziz T BakoCenter for Health Data Science and Analytics, Houston Methodist Research Institute, Houston, TX, United States.ORCID https://orcid.org/0000-0002-1584-8114
Thomas PotterCenter for Health Data Science and Analytics, Houston Methodist Research Institute, Houston, TX, United States.ORCID https://orcid.org/0000-0001-7884-4172
Alan P PanCenter for Health Data Science and Analytics, Houston Methodist Research Institute, Houston, TX, United States.ORCID https://orcid.org/0000-0002-8782-8024
Gavin W BritzDepartment of Neurosurgery, Houston Methodist Neurological Institute, Houston, TX, United States.ORCID https://orcid.org/0000-0002-2358-3005
Jonika TannousCenter for Health Data Science and Analytics, Houston Methodist Research Institute, Houston, TX, United States.ORCID https://orcid.org/0000-0003-4022-9267
Farhaan S VahidyCenter for Health Data Science and Analytics, Houston Methodist Research Institute, Houston, TX, United States.ORCID https://orcid.org/0000-0002-3464-2111

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNeuroimaging is the gold-standard diagnostic modality for all patients suspected of stroke. However, the unstructured nature of imaging reports remains a major challenge to extracting useful information from electronic health records systems. Despite the increasing adoption of natural language processing (NLP) for radiology reports, information extraction for many stroke imaging features has not been systematically evaluated.

objectiveIn this study, we propose an NLP pipeline, which adopts the state-of-the-art ClinicalBERT model with domain-specific pretraining and task-oriented fine-tuning to extract 13 stroke features from head computed tomography imaging notes.

methodsWe used the model to generate structured data sets with information on the presence or absence of common stroke features for 24,924 patients with strokes. We compared the survival characteristics of patients with and without features of severe stroke (eg, midline shift, perihematomal edema, or mass effect) using the Kaplan-Meier curve and log-rank tests.

resultsPretrained on 82,073 head computed tomography notes with 13.7 million words and fine-tuned on 200 annotated notes, our HeadCT_BERT model achieved an average area under receiver operating characteristic curve of 0.9831, F

conclusionsOur proposed NLP pipeline achieved high performance and has the potential to improve medical research and patient safety.

Indexed as

cerebral hemorrhagecomputed tomographydeep learningelectronic health recordsischemic strokenatural language processingneuroimagingradiologystroke

Identifiers

PMID38875556
PMCPMC11041442

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.