Evidence map›Paper›PMID 38875151›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Illuminating the coevolution of photosynthesis and Bacteria.

Arisa Nishihara, Yusuke Tsukatani, Chihiro Azai, Masaru K Nobu

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. An early diverging SQR enzyme in AntarcticMicrobiology spectrum · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. On the non-oxygenic origins of thylakoids.Communications biology · 2025
    Review
  10. Organic geochemical evidence for life in Archean rocks identified by pyrolysis-GC-MS and supervised machine learning.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. A diverse Palaeoproterozoic microbial ecosystem implies early eukaryogenesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  12. The emergence of metabolisms through Earth history and implications for biospheric evolution.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Article
  13. Article
  14. Article
  15. International journal of systematic and evolutionary microbiology · 2025
    Article
  16. Review
  17. Review
  18. Article
  19. Incorporation of photosynthetically active algal chloroplasts in cultured mammalian cells towards photosynthesis in animals.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2024
    Article
  20. Illuminating the coevolution of photosynthesis and Bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Arisa NishiharaDepartment of Life Science and Biotechnology, The National Institute of Advanced Industrial Science and Technology, Ibaraki 305-0817, Japan.
Yusuke TsukataniBiogeochemistry Research Center, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Kanagawa 237-0061, Japan.
Chihiro AzaiCollege of Life Sciences, Ritsumeikan University, Shiga 525-8577, Japan.
Masaru K NobuDepartment of Life Science and Biotechnology, The National Institute of Advanced Industrial Science and Technology, Ibaraki 305-0817, Japan.ORCID 0000-0002-0046-9306

Funding

MEXT | Japan Society for the Promotion of Science (JSPS) 18H03367MEXT | Japan Society for the Promotion of Science (JSPS) 18H03743MEXT | Japan Society for the Promotion of Science (JSPS) 19H02018MEXT | Japan Society for the Promotion of Science (JSPS) 19K16234MEXT | Japan Society for the Promotion of Science (JSPS) 21K06220MEXT | Japan Society for the Promotion of Science (JSPS) 22H02030
6 · The paper itself

Abstract

Life harnessing light energy transformed the relationship between biology and Earth-bringing a massive flux of organic carbon and oxidants to Earth's surface that gave way to today's organotrophy- and respiration-dominated biosphere. However, our understanding of how life drove this transition has largely relied on the geological record; much remains unresolved due to the complexity and paucity of the genetic record tied to photosynthesis. Here, through holistic phylogenetic comparison of the bacterial domain and all photosynthetic machinery (totally spanning >10,000 genomes), we identify evolutionary congruence between three independent biological systems-bacteria, (bacterio)chlorophyll-mediated light metabolism (chlorophototrophy), and carbon fixation-and uncover their intertwined history. Our analyses uniformly mapped progenitors of extant light-metabolizing machinery (reaction centers, [bacterio]chlorophyll synthases, and magnesium-chelatases) and enzymes facilitating the Calvin-Benson-Bassham cycle (form I RuBisCO and phosphoribulokinase) to the same ancient Terrabacteria organism near the base of the bacterial domain. These phylogenies consistently showed that extant phototrophs ultimately derived light metabolism from this bacterium, the last phototroph common ancestor (LPCA). LPCA was a non-oxygen-generating (anoxygenic) phototroph that already possessed carbon fixation and two reaction centers, a type I analogous to extant forms and a primitive type II. Analyses also indicate chlorophototrophy originated before LPCA. We further reconstructed evolution of chlorophototrophs/chlorophototrophy post-LPCA, including vertical inheritance in Terrabacteria, the rise of oxygen-generating chlorophototrophy in one descendant branch near the Great Oxidation Event, and subsequent emergence of Cyanobacteria. These collectively unveil a detailed view of the coevolution of light metabolism and Bacteria having clear congruence with the geological record.

Indexed as

BacteriaPhotosynthesisPhylogenyBiological CoevolutionBiological EvolutionCarbon CycleEvolution, MolecularBacteriacarbon fixationphotosynthesisphototrophy

Identifiers

PMID38875151
PMCPMC11194577

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.