Evidence map›Paper›PMID 38874679›Full record

ArticlePlant molecular biology2024

Centromere sequence-independent but biased loading of subgenome-specific CENH3 variants in allopolyploid Arabidopsis suecica.

Raheleh Karimi-Ashtiyani, Ali Mohammad Banaei-Moghaddam, Takayoshi Ishii, Oda Weiss, Jörg Fuchs, Veit Schubert, Andreas Houben

Abstract read
In one paragraph

Article in Plant molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Pioneers of chromosome elimination.Frontiers in epigenetics and epigenomics · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Raheleh Karimi-AshtiyaniDepartment of Biotechnology, Faculty of Agriculture, Tarbiat Modares University, Tehran, 1497713111, Iran.ORCID http://orcid.org/0000-0001-5718-5964
Ali Mohammad Banaei-MoghaddamLaboratory of Genomics and Epigenomics (LGE), Department of Biochemistry, Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, 1417614335, Iran.ORCID http://orcid.org/0000-0003-1298-3748
Takayoshi IshiiArid Land Research Center (ALRC), Tottori University, 1390 Hamasaka, Tottori, 680-0001, Japan.ORCID http://orcid.org/0000-0001-6370-3289
Oda WeissLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Seeland, Germany.
Jörg FuchsLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Seeland, Germany.ORCID http://orcid.org/0000-0003-4171-5371
Veit SchubertLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Seeland, Germany.ORCID http://orcid.org/0000-0002-3072-0485
Andreas HoubenLeibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, 06466, Seeland, Germany. houben@ipk-gatersleben.de.ORCID http://orcid.org/0000-0003-3419-239X

Funding

Bundesministerium für Bildung, Wissenschaft, Forschung und Technologie FKZ 0315965Iran National Science Foundation 4004919Japan Society for the Promotion of Science 22K05572
6 · The paper itself

Abstract

Centromeric nucleosomes are determined by the replacement of the canonical histone H3 with the centromere-specific histone H3 (CENH3) variant. Little is known about the centromere organization in allopolyploid species where different subgenome-specific CENH3s and subgenome-specific centromeric sequences coexist. Here, we analyzed the transcription and centromeric localization of subgenome-specific CENH3 variants in the allopolyploid species Arabidopsis suecica. Synthetic A. thaliana x A. arenosa hybrids were generated and analyzed to mimic the early evolution of A. suecica. Our expression analyses indicated that CENH3 has generally higher expression levels in A. arenosa compared to A. thaliana, and this pattern persists in the hybrids. We also demonstrated that despite a different centromere DNA composition, the centromeres of both subgenomes incorporate CENH3 encoded by both subgenomes, but with a positive bias towards the A. arenosa-type CENH3. The intermingled arrangement of both CENH3 variants demonstrates centromere plasticity and may be an evolutionary adaption to handle more than one CENH3 variant in the process of allopolyploidization.

Indexed as

ArabidopsisCentromereHistonesArabidopsis ProteinsGene Expression Regulation, PlantGenome, PlantPolyploidyArabidopsis ProteinsHistonesAllopolyploidizationCENH3Centromere plasticityHaploidSpecies evolutionUniparental chromosome elimination

Identifiers

PMID38874679
PMCPMC11178584

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.