Evidence map›Paper›PMID 38873117›Full record

ArticleFrontiers in genetics2024

Whole-genome resequencing reveals genetic diversity, differentiation, and selection signatures of yak breeds/populations in southwestern China.

Shilin Zhang, Jing Li, Yanhua Zhao, Yujun Tang, Hao Li, Tianzeng Song, Tianwu An, Jiuqiang Guan, Xiaowei Li, Ming Zhang

Abstract read
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Article in Frontiers in genetics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Shilin ZhangCollege of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.
Jing LiCollege of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.
Yanhua ZhaoCollege of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.
Yujun TangCollege of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.
Hao LiCollege of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.
Tianzeng SongInstitute of Animal Science, Tibet Academy of Agricultural and Animal Husbandry Science, Lhasa, China.
Tianwu AnSichuan Academy of Grassland Science, Chengdu, China.
Jiuqiang GuanSichuan Academy of Grassland Science, Chengdu, China.
Xiaowei LiBreeding Fram of Longri, Agriculture and Rural Bureau of Aba Prefecture in Sichuan, Hongyuan, China.
Ming ZhangCollege of Animal Science and Technology, Sichuan Agricultural University, Chengdu, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Sichuan-Yunnan region is the main production area of yaks in southwestern China, with rich genetic resources of Yaks. Nevertheless, there have been limited study on the genetic characteristics of the entire yak populations in Tibet and southwestern China. In this study, we performed whole-genome resequencing to identify genetic variation information in a total of 198 individuals from six yak breeds (populations) in Sichuan (Muli yak, Jinchuan yak, Changtai yak, Maiwa yak), Yunnan (Zhongdian yak), and Tibet (Tibetan yak). The aim was to investigate the whole-genome genetic diversity, population genetic structure, and genome selection signatures. We observed that all six populations exhibit abundant genetic diversity. Except for Tibetan yaks, which showed low nucleotide diversity (0.00104), the remaining yak populations generally displayed high nucleotide diversity (0.00129-0.00153). Population genetic structure analysis revealed that, among the six yak populations, Muli yak exhibited greater differentiation from other yak populations and formed a distinct cluster independently. The Maiwa yak population displayed a complex genetic structure and exhibited gene exchange with Jinchuan and Changtai yaks. Positive selection signals were detected in candidate genes associated with growth (

Indexed as

Bos grunniensgenomic diversitypopulation genetic structureselection signaturewhole-genome resequencing

Identifiers

PMID38873117
PMCPMC11169580

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