Evidence map›Paper›PMID 38871769›Full record

ArticleScientific reports2024

Structure, gene composition, divergence time and phylogeny analysis of the woody desert species Neltuma alba, Neltuma chilensis and Strombocarpa strombulifera.

Roberto Contreras-Díaz, Felipe S Carevic, Liesbeth van den Brink, Wilson Huanca-Mamani, Patrick Jung

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Population Genomics and Genetic Diversity ofPlants (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Roberto Contreras-DíazCentro Regional de Investigación de Desarrollo Sustentable de Atacama (CRIDESAT), Universidad de Atacama, Copayapu 485, Copiapó, Chile. roberto.contreras@uda.cl.
Felipe S Carevic *Laboratorio de Ecología Vegetal, Facultad de Recursos Naturales Renovables, Universidad Arturo Prat, Campus Huayquique, Iquique, Chile.
Liesbeth van den Brink *ECOBIOSIS, Departamento de Botánica, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción, Chile.
Wilson Huanca-MamaniLaboratorio de Biología Molecular de Plantas, Facultad de Ciencias Agronómicas, Centro de Genética y Genómica UASARA, Universidad de Tarapacá, 1000000, Arica, Chile.
Patrick JungIntegrative Biotechnology, University of Applied Sciences Kaiserslautern, Carl-Schurz-Str. 10-16, 66953, Pirmasens, Germany.

Funding

ANID-FONDECYT Initiation 11230668ANID PIA/ACT 210038German Research Foundation (DFG) JU 3228/1-1Universidad de Atacama DIUDA 22423
6 · The paper itself

Abstract

Neltuma alba (Algarrobo blanco), Neltuma chilensis (Algarrobo Chileno) and Strombocarpa strombulifera (Fortuna) are some of the few drought resistant trees and shrubs found in small highly fragmented populations, throughout the Atacama Desert. We reconstructed their plastid genomes using de novo assembly of paired-end reads from total genomic DNA. We found that the complete plastid genomes of N. alba and N. chilensis are larger in size compared to species of the Strombocarpa genus. The Strombocarpa species presented slightly more GC content than the Neltuma species. Therefore, we assume that Strombocarpa species have been exposed to stronger natural selection than Neltuma species. We observed high variation values in the number of cpSSRs (chloroplast simple sequence repeats) and repeated elements among Neltuma and Strombocarpa species. The p-distance results showed a low evolutionary divergence within the genus Neltuma, whereas a high evolutionary divergence was observed between Strombocarpa species. The molecular divergence time found in Neltuma and Strombocarpa show that these genera diverged in the late Oligocene. With this study we provide valuable information about tree species that provide important ecosystem services in hostile environments which can be used to determine these species in the geographically isolated communities, and keep the highly fragmented populations genetically healthy.

Indexed as

PhylogenyBase CompositionDesert ClimateEvolution, MolecularGenetic VariationGenome, Plastid

Identifiers

PMID38871769
PMCPMC11176173

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.