Evidence map›Paper›PMID 38871730›Full record

ArticleNature communications2024

Prostate cancer reshapes the secreted and extracellular vesicle urinary proteomes.

Amanda Khoo, Meinusha Govindarajan, Zhuyu Qiu, Lydia Y Liu, Vladimir Ignatchenko, Matthew Waas, Andrew Macklin, Alexander Keszei, Sarah Neu, Brian P Main and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors.

Amanda Khoo *Department of Medical Biophysics, University of Toronto, Toronto, ON, M5G 1L7, Canada.
Meinusha Govindarajan *Department of Medical Biophysics, University of Toronto, Toronto, ON, M5G 1L7, Canada.
Zhuyu Qiu *Jonsson Comprehensive Cancer Center, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90024, USA.ORCID 0000-0003-2510-7069
Lydia Y LiuDepartment of Medical Biophysics, University of Toronto, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0001-6026-3169
Vladimir IgnatchenkoPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2C1, Canada.
Matthew WaasPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2C1, Canada.
Andrew MacklinPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2C1, Canada.
Alexander KeszeiPrincess Margaret Cancer Centre, University Health Network, Toronto, ON, M5G 2C1, Canada.
Sarah NeuDivision of Surgery, Urology, Sunnybrook Health Sciences Centre, Toronto, ON, M4N 3M5, Canada.
Brian P MainLeroy T. Canoles Jr. Cancer Research Center, Eastern Virginia Medical School, Norfolk, VA, 23507, USA.
Lifang YangLeroy T. Canoles Jr. Cancer Research Center, Eastern Virginia Medical School, Norfolk, VA, 23507, USA.
Raymond S LanceSpokane Urology, Spokane, WA, 99202, USA.
Michelle R DownesDivision of Anatomic Pathology, Laboratory Medicine and Molecular Diagnostics, Sunnybrook Health Sciences Centre, Toronto, ON, M4N 3M5, Canada.
O John SemmesLeroy T. Canoles Jr. Cancer Research Center, Eastern Virginia Medical School, Norfolk, VA, 23507, USA.ORCID 0000-0001-9927-4869
Danny VespriniDepartment of Radiation Oncology, University of Toronto, Toronto, ON, M5T 1P5, Canada.
Stanley K LiuDepartment of Medical Biophysics, University of Toronto, Toronto, ON, M5G 1L7, Canada.ORCID 0000-0001-6851-0857
Julius O NyalwidheLeroy T. Canoles Jr. Cancer Research Center, Eastern Virginia Medical School, Norfolk, VA, 23507, USA.
Paul C BoutrosDepartment of Medical Biophysics, University of Toronto, Toronto, ON, M5G 1L7, Canada. PBoutros@mednet.ucla.edu.ORCID 0000-0003-0553-7520
Thomas KislingerDepartment of Medical Biophysics, University of Toronto, Toronto, ON, M5G 1L7, Canada. thomas.kislinger@utoronto.ca.ORCID 0000-0003-3525-5540

Funding

Wright Regional Center for Clinical and Translational ScienceUM1TR004360 · NCATS · VIRGINIA COMMONWEALTH UNIVERSITY · PI FREDERICK Gerard MOELLER · 2023 to 2026
$16.3M
Advancing method benchmarking and data sharing through crowd-sourced competitions in cancer researchU24CA248265 · NCI · SAGE BIONETWORKS · PI BOUTROS, PAUL CHRISTOPHER, VARMA, SUSHEEL · 2020 to 2024
$4.1M
Randomized Trial of Exercise Therapy on Markers of Progression in Localized Prostate Cancer:R01CA272678 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Paul Christopher Boutros, LEE W JONES · 2022 to 2026
$3.6M
Translational Research Center in Lung Cancer Disparities (TRACER)P20CA252717 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI SEEWALDT, VICTORIA L. · 2021 to 2023
$3.2M
Virginia-UCLA-Toronto Biomarker Characterization CenterU2CCA271894 · NCI · OLD DOMINION UNIVERSITY · PI OLIVER John SEMMES · 2022 to 2026
$3.2M
Development of Protein Biomarkers in Post-DRE Urine for use in Liquid Biopsy of Prostate CancerU01CA214194 · NCI · EASTERN VIRGINIA MEDICAL SCHOOL · PI BOUTROS, PAUL CHRISTOPHER, KISLINGER, THOMAS · 2016 to 2021
$2.5M
NCATS NIH HHS UM1 TR004360NCI NIH HHS P20 CA252717NCI NIH HHS R01 CA272678NCI NIH HHS U01 CA214194NCI NIH HHS U24 CA248265NCI NIH HHS U2C CA271894U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) U01CA214194
6 · The paper itself

Abstract

Urine is a complex biofluid that reflects both overall physiologic state and the state of the genitourinary tissues through which it passes. It contains both secreted proteins and proteins encapsulated in tissue-derived extracellular vesicles (EVs). To understand the population variability and clinical utility of urine, we quantified the secreted and EV proteomes from 190 men, including a subset with prostate cancer. We demonstrate that a simple protocol enriches prostatic proteins in urine. Secreted and EV proteins arise from different subcellular compartments. Urinary EVs are faithful surrogates of tissue proteomes, but secreted proteins in urine or cell line EVs are not. The urinary proteome is longitudinally stable over several years. It can accurately and non-invasively distinguish malignant from benign prostatic lesions and can risk-stratify prostate tumors. This resource quantifies the complexity of the urinary proteome and reveals the synergistic value of secreted and EV proteomes for translational and biomarker studies.

Indexed as

Extracellular VesiclesProstatic NeoplasmsProteomeAgedBiomarkers, TumorCell Line, TumorHumansMaleMiddle AgedProstateProteomicsBiomarkers, TumorProteome

Identifiers

PMID38871730
PMCPMC11176296

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.