Evidence map›Paper›PMID 38869193›Full record

ArticleThe Journal of infectious diseases2024

Whole-Genome Sequencing of Invasive Neonatal Escherichia coli From Uppsala County, Sweden.

Anna Heydecke, Åsa Myrelid, Erik Normann, Karolina Gullsby, Eva Tano, Susanne Sütterlin

Abstract read
In one paragraph

Article in The Journal of infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anna HeydeckeCenter for Research and Development Gävleborg, Uppsala University, Gävle, Sweden.
Åsa MyrelidPediatric Inflammation, Metabolism, and Child Health Research, Department of Women´s and Children´s Health, Uppsala University, Uppsala, Sweden.
Erik NormannDepartment of Pediatrics, Uppsala University Hospital, Uppsala, Sweden.
Karolina GullsbyCenter for Research and Development Gävleborg, Uppsala University, Gävle, Sweden.
Eva TanoDepartment of Medical Sciences, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-3058-0769
Susanne SütterlinPediatric Inflammation, Metabolism, and Child Health Research, Department of Women´s and Children´s Health, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-5765-8597

Funding

Afa Insurance 150411ALFAlf de Ruvo Memorial FoundationFunds 810901Knut and Alice Wallenberg FoundationRegion Gävleborg CFUG-698631Science for Life LaboratorySNICSwedish Research Council 2019-05909Uppsala Multidisciplinary Center for Advanced Computational Science
6 · The paper itself

Abstract

backgroundThis study sought to investigate associations between virulence factors and phylogeny in all neonatal Escherichia coli bloodstream infections from patients admitted to the neonatal intensive care unit at Uppsala University Hospital between 2005 and 2020.

methodsA total of 37 E. coli isolates from 32 neonates were whole-genome sequenced and analyzed for virulence factors related to extraintestinal E. coli; patient-related data were collected retrospectively from the medical records.

resultsE. coli isolates that belong to phylogroup B2 were associated with mortality (odds ratio [OR], 26; P < .001), extreme prematurity with delivery before gestational week 28 (OR, 9; P < .05), and shock (OR, 9; P < .05) compared with isolates of non-B2 group. Female neonates were more often infected with isolates of phylogroup B2 E. coli compared with male neonates (OR, 7; P = .05). The identification of the genotoxin determinant clb coding for colibactin exhibited strong associations with mortality (OR, 67; P < .005), gestational age (OR, 18; P < .005), and shock (OR, 26; P < .005). DISCUSSION: The study highlighted the correlation between neonatal E. coli bacteremia caused by phylogroup B2 and the role of colibactin. Results emphasize difference between male and female neonates in E. coli populations in bloodstream infections.

Indexed as

Escherichia coliEscherichia coli InfectionsPhylogenyVirulence FactorsWhole Genome SequencingBacteremiaFemaleGenome, BacterialHumansInfant, NewbornIntensive Care Units, NeonatalMaleNeonatal SepsisRetrospective StudiesSwedenVirulence FactorsEscherichia coliExPECneonatal sepsispopulation geneticsvirulence factors

Identifiers

PMID38869193
PMCPMC11565901

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.