Evidence map›Paper›PMID 38868707›Full record

ReviewiMeta2022

Dynamics, gene transfer, and ecological function of intracellular and extracellular DNA in environmental microbiome.

Mao Ye, Zhongyun Zhang, Mingming Sun, Yu Shi

Abstract readReview
In one paragraph

Review in iMeta, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mao YeKey Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science Chinese Academy of Sciences Nanjing China.
Zhongyun ZhangKey Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science Chinese Academy of Sciences Nanjing China.
Mingming SunSoil Ecology Lab, College of Resources and Environmental Sciences Nanjing Agricultural University Nanjing China.
Yu ShiState Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences Henan University Kaifeng China.ORCID https://orcid.org/0000-0001-9612-8321

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extracellular DNA (eDNA) and intracellular DNA (iDNA) extensively exist in both terrestrial and aquatic environment systems and have been found to play a significant role in the nutrient cycling and genetic information transmission between the environment and microorganisms. As inert DNA sequences, eDNA is able to present stability in the environment from the ribosome enzyme lysis, therein acting as the historical genetic information archive of the microbiome. As a consequence, both eDNA and iDNA can shed light on the functional gene variety and the corresponding microbial activity. In addition, eDNA is a ubiquitous composition of the cell membrane, which exerts a great impact on the resistance of outer stress from environmental pollutants, such as heavy metals, antibiotics, pesticides, and so on. This study focuses on the environmental dynamics and the ecological functions of the eDNA and iDNA from the perspectives of environmental behavior, genetic information transmission, resistance to the environmental contaminants, and so on. By reviewing the status quo and the future vista of the e/iDNAs research, this article sheds light on exploring the ecological functioning of the e/iDNAs in the environmental microbiome.

Indexed as

ecological functionextracellular DNAfunctional genesintracellular DNAmetagenomics

Identifiers

PMID38868707
PMCPMC10989830

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.