Evidence map›Paper›PMID 38868224›Full record

ArticleiMeta2023

MicroEXPERT: Microbiome profiling platform with cross-study metagenome-wide association analysis functionality.

Pengshuo Yang, Jialiang Yang, Haixia Long, Kaimei Huang, Lei Ji, Hanyang Lin, Xiuli Jiang, Arthur Kairui Wang, Geng Tian, Kang Ning

Abstract read
In one paragraph

Article in iMeta, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pengshuo YangKey Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of AI Biology, Department of Bioinformatics and Systems Biology College of Life Science and Technology, Huazhong University of Science and Technology Wuhan Hubei China.ORCID 0000-0002-2757-3584
Jialiang YangDepartment of Sciences Geneis Beijing Co., Ltd. Beijing China.
Haixia LongDepartment of Information Science Technology Hainan Normal University Haikou China.
Kaimei HuangDepartment of Mathematics Zhejiang Normal University Jinhua China.ORCID 0000-0002-4863-4737
Lei JiDepartment of Sciences Geneis Beijing Co., Ltd. Beijing China.
Hanyang LinDepartment of Sciences Sequenxe Biological Technology Co., Ltd. Xiamen China.
Xiuli JiangDepartment of Sciences Sequenxe Biological Technology Co., Ltd. Xiamen China.
Arthur Kairui WangDepartment of Biology Dulwich College London UK.
Geng TianDepartment of Sciences Geneis Beijing Co., Ltd. Beijing China.
Kang NingKey Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular-imaging, Center of AI Biology, Department of Bioinformatics and Systems Biology College of Life Science and Technology, Huazhong University of Science and Technology Wuhan Hubei China.ORCID 0000-0003-3325-5387

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The framework of the MicroEXPERT platform. Our Platform was composed of five modules. Data management module: Users upload raw data and metadata to the system using a guided workflow. Data processing module: Uploaded data is processed to generate taxonomical distribution and functional composition results. Metagenome-wide association studies module (MWAS): Various methods, including biomarker analysis, PCA, co-occurrence networks, and sample classification, are employed using metadata. Data search module: Users can query nucleotide sequences to retrieve information in the MicroEXPERT database. Data visualization module: Visualization tools are used to illustrate the metagenome analysis results.

Identifiers

PMID38868224
PMCPMC10989818

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.