Evidence map›Paper›PMID 38867758›Full record

ArticleNeurophotonics2024

OpenSTED: open-source dynamic intensity minimum system for stimulated emission depletion microscopy.

Stephanie A Pierce, Jordan Jacobelli, Katherine S Given, Wendy B Macklin, Juliet T Gopinath, Mark E Siemens, Diego Restrepo, Emily A Gibson

Abstract read
In one paragraph

Article in Neurophotonics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Stephanie A PierceUniversity of Colorado Anschutz Medical Campus, Department of Bioengineering, Aurora, Colorado, United States.ORCID https://orcid.org/0000-0002-5054-8555
Jordan JacobelliUniversity of Colorado Anschutz Medical Campus, Department of Immunology and Microbiology, Aurora, Colorado, United States.ORCID https://orcid.org/0000-0001-6612-6704
Katherine S GivenUniversity of Colorado Anschutz Medical Campus, Department of Cell and Developmental Biology, Aurora, Colorado, United States.
Wendy B MacklinUniversity of Colorado Anschutz Medical Campus, Department of Cell and Developmental Biology, Aurora, Colorado, United States.
Juliet T GopinathUniversity of Colorado Boulder, Department of Electrical, Computer, and Energy Engineering, Boulder, Colorado, United States.
Mark E SiemensUniversity of Denver, Department of Physics and Astronomy, Denver, Colorado, United States.
Diego RestrepoUniversity of Colorado Anschutz Medical Campus, Department of Cell and Developmental Biology, Aurora, Colorado, United States.
Emily A GibsonUniversity of Colorado Anschutz Medical Campus, Department of Bioengineering, Aurora, Colorado, United States.ORCID https://orcid.org/0000-0002-3436-1483

Funding

Mechanisms of regulation of lymphocyte migration by actin cytoskeletal effectorsR01AI167943 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Jordan Jacobelli · 2022 to 2026
$2.4M
NIAID NIH HHS R01 AI167943
6 · The paper itself

Abstract

Significance: Stimulated emission depletion (STED) is a powerful super-resolution microscopy technique that can be used for imaging live cells. However, the high STED laser powers can cause significant photobleaching and sample damage in sensitive biological samples. The dynamic intensity minimum (DyMIN) technique turns on the STED laser only in regions of the sample where there is fluorescence signal, thus saving significant sample photobleaching. The reduction in photobleaching allows higher resolution images to be obtained and longer time-lapse imaging of live samples. A stand-alone module to perform DyMIN is not available commercially. Aim: In this work, we developed an open-source design to implement three-step DyMIN on a STED microscope and demonstrated reduced photobleaching for timelapse imaging of beads, cells, and tissue. Approach: The DyMIN system uses a fast multiplexer circuit and inexpensive field-programmable gate array controlled by Labview software that operates as a stand-alone module for a STED microscope. All software and circuit diagrams are freely available. Results: We compared time-lapse images of bead samples using our custom DyMIN system to conventional STED and recorded a Conclusions: Our open-source DyMIN system is an inexpensive add-on to a conventional STED microscope that can reduce photobleaching. The system can significantly improve signal to noise for dynamic time-lapse STED imaging of live samples.

Indexed as

dynamic minimumfluorescencemicroscopystimulated emission depletionsuper-resolution

Identifiers

PMID38867758
PMCPMC11167952

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.