Evidence map›Paper›PMID 38866889›Full record

ArticleScientific data2024

Chromosome-scale genome assembly of medicinal plant Tinospora sagittata (Oliv.) Gagnep. from the Menispermaceae family.

Mohammad Murtaza Alami, Shaohua Shu, Sanbo Liu, Zhen Ouyang, Yipeng Zhang, Meijia Lv, Yonghui Sang, Dalin Gong, Guozheng Yang, Shengqiu Feng and 3 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Mohammad Murtaza AlamiCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.ORCID 0000-0003-0124-8473
Shaohua ShuCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.ORCID 0000-0001-5230-7707
Sanbo LiuChina Resources Sanjiu (Huangshi) Pharmaceutical Co., Ltd., Huangshi, 435000, Hubei, China.
Zhen OuyangCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
Yipeng ZhangCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
Meijia LvCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
Yonghui SangCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
Dalin GongChina Resources Sanjiu (Huangshi) Pharmaceutical Co., Ltd., Huangshi, 435000, Hubei, China.
Guozheng YangCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
Shengqiu FengCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.ORCID 0000-0002-6286-8273
Zhinan MeiCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
De-Yu XieDepartment of Plant and Microbial Biology, North Carolina State University, Raleigh, NC, 27695, USA.
Xuekui WangCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China. wang-xuekui@mail.hzau.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tinospora sagittata (Oliv.) Gagnep. is an important medicinal tetraploid plant in the Menispermaceae family. Its tuber, Radix Tinosporae, used in traditional Chinese medicine, is rich in diterpenoids and benzylisoquinoline alkaloids (BIAs). To enhance our understanding of medicinal compounds' biosynthesis and Menispermaceae's evolution, we herein report assembling a high-quality chromosome-scale genome with both PacBio HiFi and Illumina sequencing technologies. PacBio Sequel II generated 2.5 million circular consensus sequencing (CCS) reads, and a hybrid assembly strategy with Illumina sequencing resulted in 4483 contigs. The assembled genome size was 2.33 Gb, consisting of 4070 scaffolds (N50 = 42.06 Mb), of which 92.05% were assigned to 26 pseudochromosomes. T. sagittata's chromosomal-scale genome assembly, the first species in Menispermaceae, aids Menispermaceae evolution and T. sagittata's secondary metabolites biosynthesis understanding.

Indexed as

Genome, PlantPlants, MedicinalTinosporaChromosomes, PlantMenispermaceae

Identifiers

PMID38866889
PMCPMC11169364

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.