Evidence map›Paper›PMID 38866743›Full record

ArticleNature communications2024

Entire expressed peripheral blood transcriptome in pediatric severe malarial anemia.

Samuel B Anyona, Qiuying Cheng, Sharley A Wasena, Shamim W Osata, Yan Guo, Evans Raballah, Ivy Hurwitz, Clinton O Onyango, Collins Ouma, Philip D Seidenberg and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Diagnostic accuracy ofExperimental biology and medicine (Maywood, N.J.) · 2025
    Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Samuel B AnyonaDepartment of Medical Biochemistry, School of Medicine, Maseno University, Maseno, 40105, Kenya. sanyona@maseno.ac.ke.ORCID http://orcid.org/0000-0001-5813-4018
Qiuying ChengDepartment of Internal Medicine, Center for Global Health, University of New Mexico, Albuquerque, NM, 87131-0001, USA.ORCID http://orcid.org/0000-0002-1343-1171
Sharley A WasenaUniversity of New Mexico-Kenya Global Health Programs, Kisumu and Siaya, 40100, Kenya.
Shamim W OsataUniversity of New Mexico-Kenya Global Health Programs, Kisumu and Siaya, 40100, Kenya.ORCID http://orcid.org/0000-0002-1067-2818
Yan GuoDepartment of Public Health Sciences, University of Miami, Miami, 33136, USA.
Evans RaballahUniversity of New Mexico-Kenya Global Health Programs, Kisumu and Siaya, 40100, Kenya.ORCID http://orcid.org/0000-0002-3304-6836
Ivy HurwitzDepartment of Internal Medicine, Center for Global Health, University of New Mexico, Albuquerque, NM, 87131-0001, USA.ORCID http://orcid.org/0000-0003-1566-1111
Clinton O OnyangoUniversity of New Mexico-Kenya Global Health Programs, Kisumu and Siaya, 40100, Kenya.ORCID http://orcid.org/0000-0002-4197-5336
Collins OumaUniversity of New Mexico-Kenya Global Health Programs, Kisumu and Siaya, 40100, Kenya.ORCID http://orcid.org/0000-0001-8205-8887
Philip D SeidenbergDepartment of Emergency Medicine, School of Medicine, University of New Mexico, Albuquerque, NM, 87131-0001, USA.
Benjamin H McMahonTheoretical Biology and Biophysics Group, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM, 87545, USA.
Christophe G LambertDepartment of Internal Medicine, Division of Translational Informatics, University of New Mexico, Albuquerque, NM, 87131-0001, USA.ORCID http://orcid.org/0000-0003-1994-2893
Kristan A SchneiderDepartment of Internal Medicine, Division of Translational Informatics, University of New Mexico, Albuquerque, NM, 87131-0001, USA.ORCID http://orcid.org/0000-0003-4138-1180
Douglas J PerkinsUniversity of New Mexico-Kenya Global Health Programs, Kisumu and Siaya, 40100, Kenya. dperkins@salud.unm.edu.ORCID http://orcid.org/0000-0001-9390-6255

Funding

Partnership for Global Health Research Training Program (Renewal)-Supplement for OBSSR, NCI, NCI-AIDS and NIDCDD43TW010543 · FIC · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Wafaie W Fawzi, DAVIDSON HOWES HAMER · 2017 to 2026
$12.1M
Harnessing the Malarial Immunity Omics Landscape in Vaccinated and Unvaccinated Children for Improved Therapeutic StrategiesR01AI130473 · NIAID · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Samuel Bonuke Anyona, Douglas Jay Perkins · 2018 to 2026
$5.6M
TRAINING AND RESEARCH ON SEVERE MALARIAL ANEMIAD43TW005884 · FIC · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Collins Ouma, Douglas Jay Perkins · 2002 to 2026
$5.2M
GENETIC BASIS OF SEVERE MALARIAL ANEMIAR01AI051305 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PERKINS, DOUGLAS JAY · 2002 to 2011
$4.7M
Dysregulation of the Human Ubiquitin Proteasome System in Pediatric Severe Malarial AnemiaK43TW011581 · FIC · MASENO UNIVERSITY · PI ANYONA, SAMUEL BONUKE · 2020 to 2023
$280k
Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Division of Intramural Research of the NIAID) R01AI130473Division of Intramural Research, National Institute of Allergy and Infectious Diseases (Division of Intramural Research of the NIAID) R01AI51305DOE | LDRD | Los Alamos National Laboratory (Los Alamos Lab) 20150090DRFIC NIH HHS D43 TW005884FIC NIH HHS D43 TW010543FIC NIH HHS K43 TW011581NIAID NIH HHS R01 AI051305NIAID NIH HHS R01 AI130473U.S. Department of Health & Human Services | NIH | Fogarty International Center (FIC) D43TW010543U.S. Department of Health & Human Services | NIH | Fogarty International Center (FIC) D43TW05884U.S. Department of Health & Human Services | NIH | Fogarty International Center (FIC) K43TW011581
6 · The paper itself

Abstract

This study on severe malarial anemia (SMA: Hb < 6.0 g/dL), a leading global cause of childhood morbidity and mortality, compares the entire expressed whole blood host transcriptome between Kenyan children (3-48 mos.) with non-SMA (Hb ≥ 6.0 g/dL, n = 39) and SMA (n = 18). Differential expression analyses reveal 1403 up-regulated and 279 down-regulated transcripts in SMA, signifying impairments in host inflammasome activation, cell death, and innate immune and cellular stress responses. Immune cell profiling shows decreased memory responses, antigen presentation, and immediate pathogen clearance, suggesting an immature/improperly regulated immune response in SMA. Module repertoire analysis of blood-specific gene signatures identifies up-regulation of erythroid genes, enhanced neutrophil activation, and impaired inflammatory responses in SMA. Enrichment analyses converge on disruptions in cellular homeostasis and regulatory pathways for the ubiquitin-proteasome system, autophagy, and heme metabolism. Pathway analyses highlight activation in response to hypoxic conditions [Hypoxia Inducible Factor (HIF)-1 target and Reactive Oxygen Species (ROS) signaling] as a central theme in SMA. These signaling pathways are also top-ranking in protein abundance measures and a Ugandan SMA cohort with available transcriptomic data. Targeted RNA-Seq validation shows strong concordance with our entire expressed transcriptome data. These findings identify key molecular themes in SMA pathogenesis, offering potential targets for new malaria therapies.

Indexed as

AnemiaTranscriptomeChild, PreschoolFemaleGene Expression ProfilingHumansImmunity, InnateInfantKenyaMalariaMaleReactive Oxygen SpeciesReactive Oxygen Species

Identifiers

PMID38866743
PMCPMC11169501

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.