Evidence map›Paper›PMID 38865454›Full record

ArticleScience advances2024

Green/red light-sensing mechanism in the chromatic acclimation photosensor.

Takayuki Nagae, Yuya Fujita, Tatsuya Tsuchida, Takanari Kamo, Ryoka Seto, Masako Hamada, Hiroshi Aoyama, Ayana Sato-Tomita, Tomotsumi Fujisawa, Toshihiko Eki and 7 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Direct evidence for a deprotonated lysine serving as a H-bond "acceptor" in a photoreceptor protein.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Takayuki NagaeDepartment of Molecular Biophysics, School of Pharmacy, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo 192-0392, Japan.ORCID 0000-0001-7016-5183
Yuya FujitaDepartment of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi, Aichi 441-8580, Japan.ORCID 0009-0006-7327-3829
Tatsuya TsuchidaDivision of Material Sciences, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa 920-1192, Japan.
Takanari KamoDepartment of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi, Aichi 441-8580, Japan.
Ryoka SetoDepartment of Chemistry and Applied Chemistry, Faculty of Science and Engineering, Saga University, Honjomachi, Saga 840-8502, Japan.
Masako HamadaDepartment of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi, Aichi 441-8580, Japan.
Hiroshi AoyamaDepartment of Molecular Biophysics, School of Pharmacy, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo 192-0392, Japan.ORCID 0000-0002-7655-9359
Ayana Sato-TomitaDivision of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi 329-0498, Japan.ORCID 0000-0002-1173-1058
Tomotsumi FujisawaDepartment of Chemistry and Applied Chemistry, Faculty of Science and Engineering, Saga University, Honjomachi, Saga 840-8502, Japan.ORCID 0000-0002-3282-6814
Toshihiko EkiDepartment of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi, Aichi 441-8580, Japan.
Yohei MiyanoiriInstitute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.ORCID 0000-0001-6889-5160
Yutaka ItoDepartment of Chemistry, Graduate School of Science, Tokyo Metropolitan University, Hachioji, Tokyo 192-0397, Japan.ORCID 0000-0002-1030-4660
Takahiro SoetaDivision of Material Sciences, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa 920-1192, Japan.
Yutaka UkajiDivision of Material Sciences, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa 920-1192, Japan.
Masashi UnnoDepartment of Chemistry and Applied Chemistry, Faculty of Science and Engineering, Saga University, Honjomachi, Saga 840-8502, Japan.ORCID 0000-0002-5016-6274
Masaki MishimaDepartment of Molecular Biophysics, School of Pharmacy, Tokyo University of Pharmacy and Life Sciences, Hachioji, Tokyo 192-0392, Japan.ORCID 0000-0001-7626-7287
Yuu HiroseDepartment of Applied Chemistry and Life Science, Toyohashi University of Technology, Toyohashi, Aichi 441-8580, Japan.ORCID 0000-0003-1116-8979

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Certain cyanobacteria alter their photosynthetic light absorption between green and red, a phenomenon called complementary chromatic acclimation. The acclimation is regulated by a cyanobacteriochrome-class photosensor that reversibly photoconverts between green-absorbing (Pg) and red-absorbing (Pr) states. Here, we elucidated the structural basis of the green/red photocycle. In the Pg state, the bilin chromophore adopted the extended C15-

Indexed as

LightAcclimatizationBacterial ProteinsBile PigmentsCyanobacteriaModels, MolecularPhotosynthesisPhytochromeRed LightBacterial ProteinsBile PigmentsPhytochrome

Identifiers

PMID38865454
PMCPMC11168458

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.