Evidence map›Paper›PMID 38865088›Full record

ReviewThe Journal of cell biology2024

AI analysis of super-resolution microscopy: Biological discovery in the absence of ground truth.

Ivan R Nabi, Ben Cardoen, Ismail M Khater, Guang Gao, Timothy H Wong, Ghassan Hamarneh

Abstract readReview
In one paragraph

Review in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ivan R NabiDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0002-0670-0513
Ben CardoenSchool of Computing Science, Simon Fraser University, Burnaby, Canada.ORCID 0000-0001-6871-1165
Ismail M KhaterSchool of Computing Science, Simon Fraser University, Burnaby, Canada.ORCID 0000-0001-7827-7745
Guang GaoDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0000-0001-7523-2234
Timothy H WongDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, Canada.ORCID 0009-0007-1015-9145
Ghassan HamarnehSchool of Computing Science, Simon Fraser University, Burnaby, Canada.ORCID 0000-0001-5040-7448

Funding

CIHR AWD-022443Natural Sciences and Engineering Research Council of Canada RGPIN-2019-05179
6 · The paper itself

Abstract

Super-resolution microscopy, or nanoscopy, enables the use of fluorescent-based molecular localization tools to study molecular structure at the nanoscale level in the intact cell, bridging the mesoscale gap to classical structural biology methodologies. Analysis of super-resolution data by artificial intelligence (AI), such as machine learning, offers tremendous potential for the discovery of new biology, that, by definition, is not known and lacks ground truth. Herein, we describe the application of weakly supervised paradigms to super-resolution microscopy and its potential to enable the accelerated exploration of the nanoscale architecture of subcellular macromolecules and organelles.

Indexed as

Artificial IntelligenceMicroscopyAnimalsHumansImage Processing, Computer-AssistedMachine LearningMicroscopy, Fluorescence

Identifiers

PMID38865088
PMCPMC11169916

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.