Evidence map›Paper›PMID 38864871›Full record

ArticleJournal of molecular evolution2024

Diversification of von Willebrand Factor A and Chitin-Binding Domains in Pif/BMSPs Among Mollusks.

Keisuke Shimizu, Lumi Negishi, Hitoshi Kurumizaka, Michio Suzuki

Abstract read
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Article in Journal of molecular evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Keisuke ShimizuResearch Institute for Global Change, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-Cho, Yokosuka, Kanagawa, 237-0061, Japan.
Lumi NegishiInstitute for Quantitative Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657, Japan.
Hitoshi KurumizakaInstitute for Quantitative Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657, Japan.
Michio SuzukiDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo, Tokyo, 113-8657, Japan. amichiwo@mail.ecc.u-tokyo.ac.jp.

Funding

Environmental Restoration and Conservation Agency 1CN-2201Japan Agency for Medical Research and Development JP23ama121009Japan Society for the Promotion of Science 23H00339Japan Society for the Promotion of Science JP19H03045Japan Society for the Promotion of Science JP19H05771
6 · The paper itself

Abstract

Pif is a shell matrix protein (SMP) identified in the nacreous layer of Pinctada fucata (Pfu) comprised two proteins, Pif97 and Pif 80. Pif97 contains a von Willebrand factor A (VWA) and chitin-binding domains, whereas Pif80 can bind calcium carbonate crystals. The VWA domain is conserved in the SMPs of various mollusk species; however, their phylogenetic relationship remains obscure. Furthermore, although the VWA domain participates in protein-protein interactions, its role in shell formation has not been established. Accordingly, in the current study, we investigate the phylogenetic relationship between PfuPif and other VWA domain-containing proteins in major mollusk species. The shell-related proteins containing VWA domains formed a large clade (the Pif/BMSP family) and were classified into eight subfamilies with unique sequential features, expression patterns, and taxa diversity. Furthermore, a pull-down assay using recombinant proteins containing the VWA domain of PfuPif 97 revealed that the VWA domain interacts with five nacreous layer-related SMPs of P. fucata, including Pif 80 and nacrein. Collectively, these results suggest that the VWA domain is important in the formation of organic complexes and participates in shell mineralisation.

Indexed as

ChitinPhylogenyvon Willebrand FactorAmino Acid SequenceAnimalsAnimal ShellsMolluscaPinctadaProtein BindingProtein DomainsChitinvon Willebrand FactorEvolutionMineralizationMolluscavon Willebrand factor A

Identifiers

PMID38864871
PMCPMC11291548

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.