Evidence map›Paper›PMID 38864740›Full record

ArticleProtein science : a publication of the Protein Society2024

Kinetic isotope effect reveals rate-limiting step in green-to-red photoconvertible fluorescent proteins.

Bella Breen, Julian P Whitelegge, Rebekka M Wachter

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Bella BreenSchool of Molecular Sciences, Center for Bioenergy and Photosynthesis, Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona, USA.
Julian P WhiteleggePasarow Mass Spectrometry Laboratory, NPI-Semel Institute, University of California Los Angeles, Los Angeles, California, USA.
Rebekka M WachterSchool of Molecular Sciences, Center for Bioenergy and Photosynthesis, Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona, USA.ORCID 0000-0002-4693-4488

Funding

National Science Foundation MCB-0615938
6 · The paper itself

Abstract

Photoconvertible fluorescent proteins (pcFPs) undergo a slow photochemical transformation when irradiated with blue light. Since their emission is shifted from green to red, pcFPs serve as convenient fusion tags in several cutting-edge biological imaging technologies. Here, a pcFP termed the Least Evolved Ancestor (LEA) was used as a model system to determine the rate-limiting step of photoconversion. Perdeuterated histidine residues were introduced by isotopic enrichment and chromophore content was monitored by absorbance. pH-dependent photoconversion experiments were carried out by exposure to 405-nm light followed by dark equilibration. The loss of green chromophore correlated well with the rise of red, and maximum photoconversion rates were observed at pH 6.5 (0.059 ± 0.001 min

Indexed as

Luminescent ProteinsDeuteriumGreen Fluorescent ProteinsHistidineHydrogen-Ion ConcentrationKineticsLightPhotochemical ProcessesRed Fluorescent ProteinDeuteriumGreen Fluorescent ProteinsHistidineLuminescent ProteinsRed Fluorescent Proteindeuterium kinetic isotope effectphotoconvertible fluorescent proteinrate‐determining step

Identifiers

PMID38864740
PMCPMC11168066

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.