Evidence map›Paper›PMID 38862487›Full record

ArticleNature communications2024

Single-cell analysis identifies conserved features of immune dysfunction in simulated microgravity and spaceflight.

Fei Wu, Huixun Du, Eliah Overbey, JangKeun Kim, Priya Makhijani, Nicolas Martin, Chad A Lerner, Khiem Nguyen, Jordan Baechle, Taylor R Valentino and 15 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. The Final Frontier: Toward Transformative Insights into the Pathophysiologic Adaptations to Microgravity with Molecular Imaging.Journal of nuclear medicine : official publication, Society of Nuclear Medicine · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. [Potential biological mechanisms underlying spaceflight-induced depression symptoms in astronauts].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2025
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Fei Wu *Buck Institute for Research on Aging, Novato, CA, 94945, USA.ORCID http://orcid.org/0000-0002-8353-7676
Huixun Du *Buck Institute for Research on Aging, Novato, CA, 94945, USA.
Eliah OverbeyDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021, USA.
JangKeun KimDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021, USA.ORCID http://orcid.org/0000-0002-8733-9925
Priya MakhijaniBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Nicolas MartinBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Chad A LernerBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Khiem NguyenBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Jordan BaechleBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Taylor R ValentinoBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Matias FuentealbaBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Juliet M BartlesonBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Heather HalawehBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Shawn WinerDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, M5S 1A8, Canada.
Cem MeydanDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021, USA.ORCID http://orcid.org/0000-0002-0663-6216
Francine Garrett-BakelmanDepartment of Medicine, University of Virginia, Charlottesville, VA, USA.ORCID http://orcid.org/0000-0002-4771-628X
Nazish SayedStanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, CA, 94305, USA.ORCID http://orcid.org/0000-0002-8229-721X
Simon MelovBuck Institute for Research on Aging, Novato, CA, 94945, USA.ORCID http://orcid.org/0000-0001-8554-2834
Masafumi MurataniTransborder Medical Research Center, University of Tsukuba, Ibaraki, 305-8575, Japan.ORCID http://orcid.org/0000-0002-0276-8000
Akos A GerencserBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Herbert G KaslerBuck Institute for Research on Aging, Novato, CA, 94945, USA.
Afshin BeheshtiBlue Marble Space Institute of Science, Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA, 94043, USA.ORCID http://orcid.org/0000-0003-4643-531X
Christopher E MasonDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021, USA. chm2042@med.cornell.edu.ORCID http://orcid.org/0000-0002-1850-1642
David FurmanBuck Institute for Research on Aging, Novato, CA, 94945, USA. DFurman@buckinstitute.org.ORCID http://orcid.org/0000-0002-3654-9519
Daniel A WinerBuck Institute for Research on Aging, Novato, CA, 94945, USA. dwiner@buckinstitute.org.ORCID http://orcid.org/0000-0002-8702-0957

Funding

Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
The Spatiotemporal Landscape of the Human Brain EpitranscriptomeR01MH117406 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI MASON, CHRISTOPHER EDWARD · 2018 to 2022
$3.3M
NIA NIH HHS T32 AG000266NIMH NIH HHS R01 MH117406
6 · The paper itself

Abstract

Microgravity is associated with immunological dysfunction, though the mechanisms are poorly understood. Here, using single-cell analysis of human peripheral blood mononuclear cells (PBMCs) exposed to short term (25 hours) simulated microgravity, we characterize altered genes and pathways at basal and stimulated states with a Toll-like Receptor-7/8 agonist. We validate single-cell analysis by RNA sequencing and super-resolution microscopy, and against data from the Inspiration-4 (I4) mission, JAXA (Cell-Free Epigenome) mission, Twins study, and spleens from mice on the International Space Station. Overall, microgravity alters specific pathways for optimal immunity, including the cytoskeleton, interferon signaling, pyroptosis, temperature-shock, innate inflammation (e.g., Coronavirus pathogenesis pathway and IL-6 signaling), nuclear receptors, and sirtuin signaling. Microgravity directs monocyte inflammatory parameters, and impairs T cell and NK cell functionality. Using machine learning, we identify numerous compounds linking microgravity to immune cell transcription, and demonstrate that the flavonol, quercetin, can reverse most abnormal pathways. These results define immune cell alterations in microgravity, and provide opportunities for countermeasures to maintain normal immunity in space.

Indexed as

Leukocytes, MononuclearSingle-Cell AnalysisSpace FlightWeightlessness SimulationAnimalsFemaleHumansImmunity, InnateInflammationKiller Cells, NaturalMachine LearningMaleMiceMice, Inbred C57BLQuercetinSignal TransductionQuercetin

Identifiers

PMID38862487
PMCPMC11166937

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.