Evidence map›Paper›PMID 38861542›Full record

ArticlePloS one2024

Comparative evaluation of HPV genotyping: A study on the performance concordance between Anyplex II HPV28 detection and Linear Array genotyping tests in nationwide studies in Brazil.

Isabel Cristina Bandeira, Juliana Comerlato, Marina Bessel, Bruna Vieira Fernandes, Giana Mota, Luisa Lina Villa, Flávia Moreno Alves de Souza, Gerson Fernando Mendes Pereira, Eliana Marcia Wendland

Abstract readComparative Study
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Isabel Cristina BandeiraHospital Moinhos de Vento, Porto Alegre, Brazil.
Juliana ComerlatoHospital Moinhos de Vento, Porto Alegre, Brazil.
Marina BesselHospital Moinhos de Vento, Porto Alegre, Brazil.
Bruna Vieira FernandesHospital Moinhos de Vento, Porto Alegre, Brazil.
Giana MotaInnovation in Cancer Laboratory, Center for Translational Research in Oncology of the Instituto do Câncer do Estado de São Paulo (ICESP), São Paulo, Brazil.
Luisa Lina VillaInnovation in Cancer Laboratory, Center for Translational Research in Oncology of the Instituto do Câncer do Estado de São Paulo (ICESP), São Paulo, Brazil.
Flávia Moreno Alves de SouzaDepartment of Chronic Conditions and Sexually Transmitted Infections, Ministry of Health, Brasília, Brazil.
Gerson Fernando Mendes PereiraDepartment of Chronic Conditions and Sexually Transmitted Infections, Ministry of Health, Brasília, Brazil.
Eliana Marcia WendlandHospital Moinhos de Vento, Porto Alegre, Brazil.ORCID 0000-0001-6356-6413

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAdvances in laboratory techniques for HPV diagnosis necessitate a thorough assessment of the efficiency, replicability, sensitivity, and specificity of those methods. This study aims to validate and compare HPV detection/genotyping using the Anyplex™ II HPV28 Detection assay (Seegene) assay and the Linear Array HPV Genotyping test (Roche Diagnostics) on genital samples for use in epidemiological studies.

methodsFrom 6,388 penile and cervical DNA samples collected in the POP-Brazil, 1,745 were randomly selected to be included in this study. The samples were submitted to HPV detection and genotyping following the manufacturers' protocols. DNA was genotyped using the Anyplex™ II HPV28 Detection kit (Seegene), and the results were compared to those obtained using the Linear Array HPV Genotyping test (Roche Diagnostics). Concordance of HPV genotyping results was assessed by the percentage agreement and Cohen's kappa score (κ).

resultsThe agreement between the two methodologies was deemed good for HPV detection (κ = 0.78). Notably, Anyplex™ II HPV28 demonstrated enhanced capability in detecting a broader spectrum of genotypes compared to Linear Array.

conclusionAnyplex™ II HPV28 exhibited comparable results to the Linear Array assay in clinical specimens, showcasing its potential suitability for a diverse array of research applications requiring the detection and genotyping of HPV. The study supports the utility of Anyplex™ II HPV28 as an effective tool for HPV screening in epidemiological studies, emphasizing its robust performance in comparison to established diagnostic tests.

Indexed as

GenotypeGenotyping TechniquesPapillomaviridaePapillomavirus InfectionsAdultAlphapapillomavirusBrazilDNA, ViralFemaleHumansMaleMiddle AgedSensitivity and SpecificityDNA, Viral

Identifiers

PMID38861542
PMCPMC11166333

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.