Evidence map›Paper›PMID 38860762›Full record

ArticlemSphere2024

Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost.

Yaoming Li, Yaxin Xue, Taniya Roy Chowdhury, David E Graham, Susannah G Tringe, Janet K Jansson, Neslihan Taş

Abstract read
In one paragraph

Article in mSphere, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yaoming LiCollege of Grassland Science, Beijing Forest University, Beijing, China.
Yaxin XueData Sciences and Quantitative Biology, Discovery Sciences, AstraZeneca R&D, Cambridge, United Kingdom.
Taniya Roy ChowdhuryWoodwell Climate Research Center, Falmouth, Massachusetts, USA.
David E GrahamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0001-8968-7344
Susannah G TringeDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0001-6479-8427
Janet K JanssonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.ORCID 0000-0002-5487-4315
Neslihan TaşEarth and Environmental Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0001-7525-2331

Funding

DOE | SC | Pacific Northwest National Laboratory (PNNL) DE-AC06-76RL01830U.S. Department of Energy (DOE) DE-AC0205CH11231U.S. Department of Energy (DOE) NGEE Arctic
6 · The paper itself

Abstract

Climate change is rapidly transforming Arctic landscapes where increasing soil temperatures speed up permafrost thaw. This exposes large carbon stocks to microbial decomposition, possibly worsening climate change by releasing more greenhouse gases. Understanding how microbes break down soil carbon, especially under the anaerobic conditions of thawing permafrost, is important to determine future changes. Here, we studied the microbial community dynamics and soil carbon decomposition potential in permafrost and active layer soils under anaerobic laboratory conditions that simulated an Arctic summer thaw. The microbial and viral compositions in the samples were analyzed based on metagenomes, metagenome-assembled genomes, and metagenomic viral contigs (mVCs). Following the thawing of permafrost, there was a notable shift in microbial community structure, with fermentative IMPORTANCE: As the Arctic warms, thawing permafrost unlocks carbon, potentially accelerating climate change by releasing greenhouse gases. Our research delves into the underlying biogeochemical processes likely mediated by the soil microbial community in response to the wet and anaerobic conditions, akin to an Arctic summer thaw. We observed a significant shift in the microbial community post-thaw, with fermentative bacteria like

Indexed as

CarbonMicrobiotaOxidation-ReductionPermafrostSoilSoil MicrobiologyArctic RegionsBacteriaClimate ChangeFreezingMetagenomeMethaneCarbonMethaneSoilanaerobic carbon mineralizationiron reductionmetagenome-assembled genomes (MAGs)methanogenesispermafrost microbiologypermafrost thawpermafrost virussoil metagenomesoil microbiomesulfate reduction

Identifiers

PMID38860762
PMCPMC11288003

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.