Evidence map›Paper›PMID 38858518›Full record

ArticleNature chemistry2024

A folding motif formed with an expanded genetic alphabet.

Bang Wang, James R Rocca, Shuichi Hoshika, Cen Chen, Zunyi Yang, Reza Esmaeeli, Jianguo Wang, Xiaoshu Pan, Jianrong Lu, Kevin K Wang and 3 more

Abstract read
In one paragraph

Article in Nature chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Bang WangZhejiang Cancer Hospital, The Key Laboratory of Zhejiang Province for Aptamers and Theranostics, Hangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou, China.ORCID 0000-0002-5591-2280
James R RoccaAMRIS, McKnight Brain Institute, University of Florida, Gainesville, FL, USA.
Shuichi HoshikaFoundation for Applied Molecular Evolution, Alachua, FL, USA.ORCID 0000-0001-9128-1183
Cen ChenFoundation for Applied Molecular Evolution, Alachua, FL, USA.ORCID 0000-0002-6883-9369
Zunyi YangFoundation for Applied Molecular Evolution, Alachua, FL, USA. zyang@ffame.org.ORCID 0000-0002-6245-2040
Reza EsmaeeliCenter for Research at Bio/Nano Interface, Department of Chemistry, Department of Physiology and Functional Genomics, Health Cancer Center, University of Florida, Gainesville, FL, USA.ORCID 0000-0001-8679-4267
Jianguo WangCollege of Chemistry and Chemical Engineering, Inner Mongolia Key Laboratory of Fine Organic Synthesis, Inner Mongolia University, Hohhot, China.
Xiaoshu PanCenter for Research at Bio/Nano Interface, Department of Chemistry, Department of Physiology and Functional Genomics, Health Cancer Center, University of Florida, Gainesville, FL, USA.
Jianrong LuDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-4969-6040
Kevin K WangDepartment of Emergency Medicine, University of Florida, Gainesville, FL, USA.
Y Charles CaoCenter for Research at Bio/Nano Interface, Department of Chemistry, Department of Physiology and Functional Genomics, Health Cancer Center, University of Florida, Gainesville, FL, USA.ORCID 0000-0001-5476-221X
Weihong TanZhejiang Cancer Hospital, The Key Laboratory of Zhejiang Province for Aptamers and Theranostics, Hangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou, China. tan@him.cas.cn.ORCID 0000-0002-8066-1524
Steven A BennerFoundation for Applied Molecular Evolution, Alachua, FL, USA. sbenner@ffame.org.ORCID 0000-0002-3318-9917

Funding

Transforming Life Sciences: Artificial LifeR01GM128186 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2017 to 2021
$3.4M
Equipment Supplement to 1R01GM141391-01A1 (Easily Used Kits to Evolve Reagents that Covalently Tag and Inactivate Proteins)R01GM141391 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2021 to 2024
$1.4M
NMR console upgrade for structural biology and metabolomicsS10OD028753 · OD · UNIVERSITY OF FLORIDA · PI LONG, JOANNA R · 2020 to 2020
$600k
National Natural Science Foundation of China (National Science Foundation of China) 21877031National Natural Science Foundation of China (National Science Foundation of China) 21991080National Natural Science Foundation of China (National Science Foundation of China) 22274044NIGMS NIH HHS R01 GM128186NIGMS NIH HHS R01 GM141391NIH HHS S10 OD028753U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1R01GM128186U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1R01GM141391-01A1
6 · The paper itself

Abstract

Adding synthetic nucleotides to DNA increases the linear information density of DNA molecules. Here we report that it also can increase the diversity of their three-dimensional folds. Specifically, an additional nucleotide (dZ, with a 5-nitro-6-aminopyridone nucleobase), placed at twelve sites in a 23-nucleotides-long DNA strand, creates a fairly stable unimolecular structure (that is, the folded Z-motif, or fZ-motif) that melts at 66.5 °C at pH 8.5. Spectroscopic, gel and two-dimensional NMR analyses show that the folded Z-motif is held together by six reverse skinny dZ

Indexed as

DNANucleic Acid ConformationBase PairingMagnetic Resonance SpectroscopyModels, MolecularNucleotidesDNANucleotides

Identifiers

PMID38858518
PMCPMC11446821

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.