Evidence map›Paper›PMID 38858515›Full record

ArticleNature ecology & evolution2024

A somatic genetic clock for clonal species.

Lei Yu, Jessie Renton, Agata Burian, Marina Khachaturyan, Till Bayer, Jonne Kotta, John J Stachowicz, Katherine DuBois, Iliana B Baums, Benjamin Werner and 1 more

Abstract read
In one paragraph

Article in Nature ecology & evolution, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
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  8. Article
  9. A clock for clonal organisms.Nature ecology & evolution · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lei Yu *GEOMAR Helmholtz-Center for Ocean Research Kiel, Marine Evolutionary Ecology, Kiel, Germany.ORCID http://orcid.org/0000-0003-3748-5470
Jessie Renton *Evolutionary Dynamics Group, Centre for Cancer Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, London, UK.
Agata BurianInstitute of Biology, Biotechnology and Environmental Protection, University of Silesia in Katowice, Katowice, Poland.ORCID http://orcid.org/0000-0002-8912-483X
Marina KhachaturyanGEOMAR Helmholtz-Center for Ocean Research Kiel, Marine Evolutionary Ecology, Kiel, Germany.ORCID http://orcid.org/0000-0003-4495-6461
Till BayerGEOMAR Helmholtz-Center for Ocean Research Kiel, Marine Evolutionary Ecology, Kiel, Germany.ORCID http://orcid.org/0000-0002-4704-2449
Jonne KottaEstonian Marine Institute, University of Tartu, Tallinn, Estonia.ORCID http://orcid.org/0000-0002-4970-6755
John J StachowiczDepartment of Evolution and Ecology, University of California, Davis, CA, USA.ORCID http://orcid.org/0000-0003-2735-0564
Katherine DuBoisDepartment of Evolution and Ecology, University of California, Davis, CA, USA.
Iliana B BaumsHelmholtz Institute for Functional Marine Biodiversity, University of Oldenburg, Oldenburg, Germany.ORCID http://orcid.org/0000-0001-6463-7308
Benjamin WernerEvolutionary Dynamics Group, Centre for Cancer Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, London, UK. b.werner@qmul.ac.uk.ORCID http://orcid.org/0000-0002-6857-8699
Thorsten B H ReuschGEOMAR Helmholtz-Center for Ocean Research Kiel, Marine Evolutionary Ecology, Kiel, Germany. treusch@geomar.de.ORCID http://orcid.org/0000-0002-8961-4337

Funding

Human Frontier Science Program (HFSP) RGP0042_2020
6 · The paper itself

Abstract

Age and longevity are key parameters for demography and life-history evolution of organisms. In clonal species, a widespread life history among animals, plants, macroalgae and fungi, the sexually produced offspring (genet) grows indeterminately by producing iterative modules, or ramets, and so obscure their age. Here we present a novel molecular clock based on the accumulation of fixed somatic genetic variation that segregates among ramets. Using a stochastic model, we demonstrate that the accumulation of fixed somatic genetic variation will approach linearity after a lag phase, and is determined by the mitotic mutation rate, without direct dependence on asexual generation time. The lag phase decreased with lower stem cell population size, number of founder cells for the formation of new modules, and the ratio of symmetric versus asymmetric cell divisions. We calibrated the somatic genetic clock on cultivated eelgrass Zostera marina genets (4 and 17 years respectively). In a global data set of 20 eelgrass populations, genet ages were up to 1,403 years. The somatic genetic clock is applicable to any multicellular clonal species where the number of founder cells is small, opening novel research avenues to study longevity and, hence, demography and population dynamics of clonal species.

Indexed as

Reproduction, AsexualGenetic VariationModels, GeneticStochastic Processes

Identifiers

PMID38858515
PMCPMC11239492

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.