Evidence map›Paper›PMID 38855237›Full record

ArticlePeerJ. Computer science2024

D-CyPre: a machine learning-based tool for accurate prediction of human CYP450 enzyme metabolic sites.

Haolan Yang, Jie Liu, Kui Chen, Shiyu Cong, Shengnan Cai, Yueting Li, Zhixin Jia, Hao Wu, Tianyu Lou, Zuying Wei and 2 more

Abstract read
In one paragraph

Article in PeerJ. Computer science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Haolan YangSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Jie LiuBeijing University of Chinese Medicine, Research Center of Chinese Medicine Analysis and Transformation, Beijing, China.
Kui ChenSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Shiyu CongSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Shengnan CaiSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Yueting LiSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Zhixin JiaBeijing University of Chinese Medicine, Research Center of Chinese Medicine Analysis and Transformation, Beijing, China.
Hao WuSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Tianyu LouSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Zuying WeiSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Xiaoqin YangSchool of Chinese Materia Medica, Beijing University of Chinese Medicine, Beijing, China.
Hongbin XiaoBeijing University of Chinese Medicine, Research Center of Chinese Medicine Analysis and Transformation, Beijing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The advancement of graph neural networks (GNNs) has made it possible to accurately predict metabolic sites. Despite the combination of GNNs with XGBOOST showing impressive performance, this technology has not yet been applied in the realm of metabolic site prediction. Previous metabolic site prediction tools focused on bonds and atoms, regardless of the overall molecular skeleton. This study introduces a novel tool, named D-CyPre, that amalgamates atom, bond, and molecular skeleton information

Indexed as

Graph neural networksIn silico metabolism predictionMachine learning

Identifiers

PMID38855237
PMCPMC11157575

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.