Evidence map›Paper›PMID 38854018›Full record

ArticlebioRxiv : the preprint server for biology2024

Ion channel inhibition by targeted recruitment of NEDD4-2 with divalent nanobodies.

Travis J Morgenstern, Arden Darko-Boateng, Emmanuel Afriyie, Sri Karthika Shanmugam, Xinle Zhou, Papiya Choudhury, Meera Desai, Robert S Kass, Oliver B Clarke, Henry M Colecraft

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Travis J MorgensternDepartment of Molecular Pharmacology and Therapeutics, Columbia University Irving Medical Center, New York, NY.
Arden Darko-BoatengDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY.
Emmanuel AfriyieDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY.
Sri Karthika ShanmugamDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY.
Xinle ZhouDepartment of Molecular Pharmacology and Therapeutics, Columbia University Irving Medical Center, New York, NY.
Papiya ChoudhuryDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY.
Meera DesaiThe Potomac School, McLean, VA.
Robert S KassDepartment of Molecular Pharmacology and Therapeutics, Columbia University Irving Medical Center, New York, NY.
Oliver B ClarkeDepartment of Physiology and Cellular Biophysics, Columbia University Irving Medical Center, New York, NY.
Henry M ColecraftDepartment of Molecular Pharmacology and Therapeutics, Columbia University Irving Medical Center, New York, NY.ORCID 0000-0002-2340-8899

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Structure-Function of Calcium Channel Complexes in Cardiac Physiology and DiseaseP01HL164319 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREW Robert MARKS · 2023 to 2026
$12.1M
L-type channel trafficking and modulation in heartR01HL121253 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Henry M. Colecraft, Steven O Marx · 2014 to 2026
$8.4M
Towards Novel Therapies for CACNA1A Neurological DisordersR01NS126850 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Henry M. Colecraft · 2022 to 2026
$2.7M
Ubiquitin Regulation of K Channels in Health and DiseaseR01HL142111 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI COLECRAFT, HENRY M. · 2018 to 2021
$2.3M
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
Engineering Nanobodies To Study Beta Subunit-Specific Voltage-Gated Calcium Channel Complexes in Pancreatic Beta CellsF31DK118866 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MORGENSTERN, TRAVIS JAMES · 2018 to 2020
$135k
NCI NIH HHS P30 CA013696NCRR NIH HHS S10 RR027050NHLBI NIH HHS P01 HL164319NHLBI NIH HHS R01 HL121253NHLBI NIH HHS R01 HL142111NIDDK NIH HHS F31 DK118866NINDS NIH HHS R01 NS126850
6 · The paper itself

Abstract

Targeted recruitment of E3 ubiquitin ligases to degrade traditionally undruggable proteins is a disruptive paradigm for developing new therapeutics. Two salient limitations are that <2% of the ~600 E3 ligases in the human genome have been exploited to produce proteolysis targeting chimeras (PROTACs), and the efficacy of the approach has not been demonstrated for a vital class of complex multi-subunit membrane proteins- ion channels. NEDD4-1 and NEDD4-2 are physiological regulators of myriad ion channels, and belong to the 28-member HECT (homologous to E6AP C-terminus) family of E3 ligases with widespread roles in cell/developmental biology and diverse diseases including various cancers, immunological and neurological disorders, and chronic pain. The potential efficacy of HECT E3 ligases for targeted protein degradation is unexplored, constrained by a lack of appropriate binders, and uncertain due to their complex regulation by layered intra-molecular and posttranslational mechanisms. Here, we identified a nanobody that binds with high affinity and specificity to a unique site on the N-lobe of the NEDD4-2 HECT domain at a location physically separate from sites critical for catalysis- the E2 binding site, the catalytic cysteine, and the ubiquitin exosite- as revealed by a 3.1 Å cryo-electron microscopy reconstruction. Recruiting endogenous NEDD4-2 to diverse ion channel proteins (KCNQ1, ENaC, and Ca

Identifiers

PMID38854018
PMCPMC11160594

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.