Evidence map›Paper›PMID 38853984›Full record

ArticlebioRxiv : the preprint server for biology2024

Mitochondrial Calcium Signaling Regulates Branched-Chain Amino Acid Catabolism in Fibrolamellar Carcinoma.

Nicole M Marsh, Melissa J S MacEwen, Jane Chea, Heidi L Kenerson, Albert A Kwong, Timothy M Locke, Francisco Javier Miralles, Tanmay Sapre, Natasha Gozali, Madeleine L Hart and 8 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Nicole M MarshDepartment of Pharmacology, University of Washington, Seattle, WA, United States.
Melissa J S MacEwenDepartment of Pharmacology, University of Washington, Seattle, WA, United States.
Jane CheaDepartment of Pharmacology, University of Washington, Seattle, WA, United States.
Heidi L KenersonDepartment of Surgery, University of Washington Medical Center, Seattle, WA, United States.
Albert A KwongDepartment of Pharmacology, University of Washington, Seattle, WA, United States.
Timothy M LockeDepartment of Pharmacology, University of Washington, Seattle, WA, United States.
Francisco Javier MirallesDepartment of Pharmacology, University of Washington, Seattle, WA, United States.
Tanmay SapreDepartment of Pharmacology, University of Washington, Seattle, WA, United States.
Natasha GozaliDepartment of Chemistry, University at Buffalo, State University of New York, Buffalo, NY, United States.
Madeleine L HartHuman Biology Division, Fred Hutchinson Cancer Center, WA, Seattle, United States.
Theo K BammlerDepartment of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, United States.
James W MacDonaldDepartment of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, United States.
Lucas B SullivanHuman Biology Division, Fred Hutchinson Cancer Center, WA, Seattle, United States.ORCID 0000-0002-6745-8222
G Ekin Atilla-GokcumenDepartment of Chemistry, University at Buffalo, State University of New York, Buffalo, NY, United States.ORCID 0000-0002-7132-3873
Shao-En OngDepartment of Pharmacology, University of Washington, Seattle, WA, United States.ORCID 0000-0003-3314-5903
John D ScottDepartment of Pharmacology, University of Washington, Seattle, WA, United States.ORCID 0000-0002-0367-8146
Raymond S YeungDepartment of Surgery, University of Washington Medical Center, Seattle, WA, United States.
Yasemin SancakDepartment of Pharmacology, University of Washington, Seattle, WA, United States.ORCID 0000-0002-9328-7287

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI ALI SHOJAIE · 1995 to 2026
$42.5M
Understanding metabolic functions of mitochondria in proliferating cellsR35GM147118 · NIGMS · FRED HUTCHINSON CANCER CENTER · PI Lucas Bryan Sullivan · 2022 to 2026
$2.2M
Targeting Oncogenic PKA signaling mechanismsR01CA279997 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI John D Gordan, John D Scott · 2024 to 2026
$1.9M
Biased AKAP signaling mechanismsR01DK141129 · NIDDK · UNIVERSITY OF WASHINGTON · PI John D Scott · 2024 to 2026
$1.7M
Supplement to DEFINING PATHWAY-SPECIFIC KINASE SIGNALING MODULES WITH PROTEOMICSR01GM129090 · NIGMS · UNIVERSITY OF WASHINGTON · PI ONG, SHAO-EN · 2019 to 2022
$1.7M
Role of sumoylation during stress signaling responsesR35GM136234 · NIGMS · UNIVERSITY OF WASHINGTON · PI SANCAK, YASEMIN S · 2020 to 2022
$1.1M
A NanoLC-Orbitrap Tribrid Instrument for Comprehensive Proteomics AnalysesS10OD021502 · OD · UNIVERSITY OF WASHINGTON · PI ONG, SHAO-EN · 2017 to 2017
$906k
Investigating Calcium Homeostasis During a Key Mitochondrial Stress PathwayF31AG072716 · NIA · UNIVERSITY OF WASHINGTON · PI MACEWEN, MELISSA JANE · 2022 to 2023
$66k
NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA279997NIA NIH HHS F31 AG072716NIDDK NIH HHS R01 DK141129NIEHS NIH HHS P30 ES007033NIGMS NIH HHS R01 GM129090NIGMS NIH HHS R35 GM136234NIGMS NIH HHS R35 GM147118NIH HHS S10 OD021502
6 · The paper itself

Abstract

Metabolic adaptations in response to changes in energy supply and demand are essential for survival. The mitochondrial calcium uniporter plays a key role in coordinating metabolic homeostasis by regulating TCA cycle activation, mitochondrial fatty acid oxidation, and cellular calcium signaling. However, a comprehensive analysis of uniporter-regulated mitochondrial pathways has remained unexplored. Here, we investigate metabolic consequences of uniporter loss- and gain-of-function using uniporter knockout cells and the liver cancer fibrolamellar carcinoma (FLC), which we demonstrate to have elevated mitochondrial calcium levels. Our results reveal that branched-chain amino acid (BCAA) catabolism and the urea cycle are uniporter-regulated metabolic pathways. Reduced uniporter function boosts expression of BCAA catabolism genes, and the urea cycle enzyme ornithine transcarbamylase (OTC). In contrast, high uniporter activity in FLC suppresses their expression. This suppression is mediated by reduced expression of the transcription factor KLF15, a master regulator of liver metabolism. Thus, uniporter responsive calcium signaling plays a central role in FLC-associated metabolic changes, including hyperammonemia. Our study identifies an important role for mitochondrial calcium signaling in metabolic adaptation through transcriptional regulation of metabolism and elucidates its importance for BCAA and ammonia metabolism in FLC.

Identifiers

PMID38853984
PMCPMC11160645

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.