Evidence map›Paper›PMID 38853912›Full record

ArticlebioRxiv : the preprint server for biology2024

Cryo-EM and Solid State NMR Together Provide a More Comprehensive Structural Investigation of Protein Fibrils.

Blake D Fonda, Masato Kato, Yang Li, Dylan T Murray

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Blake D FondaDepartment of Chemistry, University of California, Davis, California, 95616, United States of America.ORCID 0000-0003-4952-908X
Masato KatoDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, United States of America.ORCID 0000-0001-8437-6248
Yang LiDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas, 75390, United States of America.ORCID 0000-0001-9601-4885
Dylan T MurrayDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, 06269, United States of America.ORCID 0000-0002-2402-810X

Funding

Low-complexity domain protein molecular structure, conformational dynamics, and inter-protein interactions in human health and diseaseR35GM142892 · NIGMS · UNIVERSITY OF CONNECTICUT STORRS · PI MURRAY, DYLAN THOMAS · 2021 to 2025
$1.9M
NIGMS NIH HHS R35 GM142892
6 · The paper itself

Abstract

The Tropomyosin 1 isoform I/C C-terminal domain (Tm1-LC) fibril structure is studied jointly with cryogenic electron microscopy (cryo-EM) and solid state nuclear magnetic resonance (NMR). This study demonstrates the complementary nature of these two structural biology techniques. Chemical shift assignments from solid state NMR are used to determine the secondary structure at the level of individual amino acids, which is faithfully seen in cryo-EM reconstructions. Additionally, solid state NMR demonstrates that the region not observed in the reconstructed cryo-EM density is primarily in a highly mobile random coil conformation rather than adopting multiple rigid conformations. Overall, this study illustrates the benefit of investigations combining cryo-EM and solid state NMR to investigate protein fibril structure.

Indexed as

Cryogenic electron microscopyprotein fibrilprotein structuresolid state nuclear magnetic resonance

Identifiers

PMID38853912
PMCPMC11160737

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.