Evidence map›Paper›PMID 38853856›Full record

ArticlebioRxiv : the preprint server for biology2024

RNA adapts its flexibility to efficiently fold and resist unfolding.

Sukjin S Jang, Korak Kumar Ray, David G Lynall, Kenneth L Shepard, Colin Nuckolls, Ruben L Gonzalez

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Sukjin S JangDepartment of Chemistry, Columbia University, New York, NY 10027 USA.ORCID 0009-0004-6233-1777
Korak Kumar RayDepartment of Chemistry, Columbia University, New York, NY 10027 USA.ORCID 0000-0001-5390-698X
David G LynallDepartment of Electrical Engineering, Columbia University, New York, NY 10027 USA.
Kenneth L ShepardDepartment of Electrical Engineering, Columbia University, New York, NY 10027 USA.
Colin NuckollsDepartment of Chemistry, Columbia University, New York, NY 10027 USA.ORCID 0000-0002-0384-5493
Ruben L GonzalezDepartment of Chemistry, Columbia University, New York, NY 10027 USA.ORCID 0000-0002-1344-5581

Funding

The Structural Dynamics of Translation and Translational ControlR35GM153724 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Ruben L Gonzalez · 2024 to 2026
$2.4M
Studies of Riboswitch-Mediated Transcriptional Control Using Single-Molecule FielR01GM107417 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GONZALEZ, RUBEN L, NUCKOLLS, COLIN P · 2014 to 2017
$1.5M
Combination CD-Fluorescence Polarization Spectrophotometer for the Columbia Precision Biomolecular Characterization FacilityS10OD025102 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HUNT, JOHN FRANCIS · 2018 to 2018
$138k
NIGMS NIH HHS R01 GM107417NIGMS NIH HHS R35 GM153724NIH HHS S10 OD025102
6 · The paper itself

Abstract

Recent studies have demonstrated that the mechanisms through which biopolymers like RNA interconvert between multiple folded structures are critical for their cellular functions. A major obstacle to elucidating these mechanisms is the lack of experimental approaches that can resolve these interconversions between functionally relevant biomolecular structures. Here, we dissect the complete set of structural rearrangements executed by an ultra-stable RNA, the UUCG stem-loop, at the single-molecule level using a nano-electronic device with microsecond time resolution. We show that the stem-loop samples at least four conformations along two folding pathways leading to two distinct folded structures, only one of which has been previously observed. By modulating its flexibility, the stem-loop can adaptively select between these pathways, enabling it to both fold rapidly and resist unfolding. This paradigm of stabilization through compensatory changes in flexibility broadens our understanding of stable RNA structures and is expected to serve as a general strategy employed by all biopolymers.

Identifiers

PMID38853856
PMCPMC11160689

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.