Evidence map›Paper›PMID 38851788›Full record

ArticleCommunications biology2024

Environmental microbiome diversity and stability is a barrier to antimicrobial resistance gene accumulation.

Uli Klümper, Giulia Gionchetta, Elisa Catão, Xavier Bellanger, Irina Dielacher, Alan Xavier Elena, Peiju Fang, Sonia Galazka, Agata Goryluk-Salmonowicz, David Kneis and 14 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Soil management practices shape the abundance, diversity, and spread of antimicrobial resistance.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Rethinking One Health: Microbial Foundations for Ecological Governance.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
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  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. The microbiome in mind: Reflections on antibiotic prescription in primary care.South African family practice : official journal of the South African Academy of Family Practice/Primary Care · 2025
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors.

Uli Klümper *Technische Universität Dresden, Institute for Hydrobiology, Dresden, Germany.ORCID 0000-0002-4169-6548
Giulia Gionchetta *Eawag, Swiss Federal Institute of Aquatic Science and Technology, Department of Surface Waters - Research and Management, Kastanienbaum, Switzerland.
Elisa Catão *Université de Lorraine, Villers-lès-Nancy, France.
Xavier BellangerUniversité de Lorraine, Villers-lès-Nancy, France.
Irina DielacherTU Wien, Institute of Water Quality and Resource Management, Vienna, Austria.
Alan Xavier ElenaTechnische Universität Dresden, Institute for Hydrobiology, Dresden, Germany.
Peiju FangTechnische Universität Dresden, Institute for Hydrobiology, Dresden, Germany.
Sonia GalazkaAGES - Austrian Agency for Health and Food Safety, Department for Integrative Risk Assessment, Division for Risk Assessment, Data and Statistics, Vienna, Austria.
Agata Goryluk-SalmonowiczUniversity of Warsaw, Faculty of Biology, Institute of Microbiology, Department of Bacterial Physiology, Warsaw, Poland.ORCID 0000-0002-2821-4487
David KneisTechnische Universität Dresden, Institute for Hydrobiology, Dresden, Germany.ORCID 0000-0002-6048-6984
Uchechi OkoroaforMaynooth University, Department of Biology, Kathleen Lonsdale Institute for Human Health, Maynooth, Co. Kildare, Ireland.
Elena RaduTU Wien, Institute of Water Quality and Resource Management, Vienna, Austria.
Mateusz SzadziulUniversity of Warsaw, Faculty of Biology, Institute of Microbiology, Department of Bacterial Physiology, Warsaw, Poland.ORCID 0000-0002-4678-2728
Edina SzekeresNIRDBS, Institute of Biological Research Cluj-Napoca, Cluj-Napoca, Romania.
Adela Teban-ManNIRDBS, Institute of Biological Research Cluj-Napoca, Cluj-Napoca, Romania.
Cristian ComanNIRDBS, Institute of Biological Research Cluj-Napoca, Cluj-Napoca, Romania.
Norbert KreuzingerTU Wien, Institute of Water Quality and Resource Management, Vienna, Austria.
Magdalena PopowskaUniversity of Warsaw, Faculty of Biology, Institute of Microbiology, Department of Bacterial Physiology, Warsaw, Poland.
Julia VierheiligTU Wien, Institute of Water Quality and Resource Management, Vienna, Austria.ORCID 0000-0002-9764-7534
Fiona WalshMaynooth University, Department of Biology, Kathleen Lonsdale Institute for Human Health, Maynooth, Co. Kildare, Ireland.
Markus WoegerbauerAGES - Austrian Agency for Health and Food Safety, Department for Integrative Risk Assessment, Division for Risk Assessment, Data and Statistics, Vienna, Austria.
Helmut BürgmannEawag, Swiss Federal Institute of Aquatic Science and Technology, Department of Surface Waters - Research and Management, Kastanienbaum, Switzerland.ORCID 0000-0002-5651-5906
Christophe MerlinUniversité de Lorraine, Villers-lès-Nancy, France.
Thomas Ulrich BerendonkTechnische Universität Dresden, Institute for Hydrobiology, Dresden, Germany. thomas.berendonk@tu-dresden.de.ORCID 0000-0002-9301-1803

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-19-EBI3-0005-04Austrian Science Fund (Fonds zur Förderung der Wissenschaftlichen Forschung) I 4374-BAustrian Science Fund FWF I 4374Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01DO2200Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01LC1904AChina Scholarship Council (CSC) 202004910327Deutsche Forschungsgemeinschaft (German Research Foundation) 460816351Environmental Protection Agency (EPA) 2019-NC-MS-9Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 186531
6 · The paper itself

Abstract

When antimicrobial resistant bacteria (ARB) and genes (ARGs) reach novel habitats, they can become part of the habitat's microbiome in the long term if they are able to overcome the habitat's biotic resilience towards immigration. This process should become more difficult with increasing biodiversity, as exploitable niches in a given habitat are reduced for immigrants when more diverse competitors are present. Consequently, microbial diversity could provide a natural barrier towards antimicrobial resistance by reducing the persistence time of immigrating ARB and ARG. To test this hypothesis, a pan-European sampling campaign was performed for structured forest soil and dynamic riverbed environments of low anthropogenic impact. In soils, higher diversity, evenness and richness were significantly negatively correlated with relative abundance of >85% of ARGs. Furthermore, the number of detected ARGs per sample were inversely correlated with diversity. However, no such effects were present in the more dynamic riverbeds. Hence, microbiome diversity can serve as a barrier towards antimicrobial resistance dissemination in stationary, structured environments, where long-term, diversity-based resilience against immigration can evolve.

Indexed as

BiodiversityDrug Resistance, BacterialMicrobiotaSoil MicrobiologyAnti-Bacterial AgentsBacteriaEcosystemGenes, BacterialRiversAnti-Bacterial Agents

Identifiers

PMID38851788
PMCPMC11162449

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.