Evidence map›Paper›PMID 38850451›Full record

ArticleArchives of virology2024

Molecular characterization of birch toti-like virus, a plant-associated member of the new family Orthototiviridae.

Edison Reyes-Proaño, A Jenny Knerr, Alexander V Karasev

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Article in Archives of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Edison Reyes-ProañoDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA.
A Jenny KnerrDepartment of Plant Sciences, University of Idaho, Moscow, ID, 83844, USA.
Alexander V KarasevDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, ID, 83844, USA. akarasev@uidaho.edu.ORCID http://orcid.org/0000-0001-8197-0639

Funding

USDA-NIFA Hatch Project IDA01712
6 · The paper itself

Abstract

A novel totivirus, named "birch toti-like virus" (BTLV), was discovered in European white birch (Betula pendula) plants. The genome of BTLV is 4,967 nucleotides long and contains two overlapping open reading frames (ORFs) coding for the capsid protein (CP) and an RNA-dependent RNA-polymerase (RdRP). The encoded CP and RdRP proteins shared 46.9% and 60.2% amino acid sequence identity, respectively, with those of Panax notoginseng virus B. The presence of a putative slippery heptamer signal 82 nt upstream of the stop codon of ORF1 suggests that a -1 translational frameshifting strategy is involved in the expression of ORF2, like in other totiviruses. Phylogenetic analysis based on the CP and RdRP amino acid sequences placed this virus within a clade of plant-associated totiviruses, with taro-associated virus as its closest relative. Hence, based on its distinct host and the amino acid sequence similarity between BTLV and its relatives, we conclude that birch toti-like virus is a new member of the genus Totivirus.

Indexed as

BetulaGenome, ViralOpen Reading FramesPhylogenyPlant DiseasesAmino Acid SequenceCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, ViralTotiviridaeViral ProteinsCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, ViralViral Proteins

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.