Evidence map›Paper›PMID 38849987›Full record

ArticlePlant physiology2024

CDPK5 and CDPK13 play key roles in acclimation to low oxygen through the control of RBOH-mediated ROS production in rice.

Jingxia Li, Takahiro Ishii, Miki Yoshioka, Yuta Hino, Mika Nomoto, Yasuomi Tada, Hirofumi Yoshioka, Hirokazu Takahashi, Takaki Yamauchi, Mikio Nakazono

Abstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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  10. Loss of calcium-dependent protein kinases OsCPK5 and OsCPK13 leads to NLR-dependent resistance in rice.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jingxia LiGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0009-0002-6000-8859
Takahiro IshiiGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.
Miki YoshiokaGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0009-0003-1527-6384
Yuta HinoGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0009-0000-1814-9653
Mika NomotoGraduate School of Science, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0002-0544-2321
Yasuomi TadaGraduate School of Science, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0001-9900-069X
Hirofumi YoshiokaGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0003-3956-7250
Hirokazu TakahashiGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0001-6182-3236
Takaki YamauchiBioscience and Biotechnology Center, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0002-6772-6506
Mikio NakazonoGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0001-7119-2052

Funding

Grant-in-Aid for Transformative Research Areas (A)Japan Society for the Promotion of ScienceJSPSJST SPRING JPMJSP2125KAKENHI 21H04724MEXT KAKENHI 20H05912
6 · The paper itself

Abstract

CALCIUM-DEPENDENT PROTEIN KINASE (CDPK) stimulates reactive oxygen species (ROS)-dependent signaling by activating RESPIRATORY BURST OXIDASE HOMOLOG (RBOH). The lysigenous aerenchyma is a gas space created by cortical cell death that facilitates oxygen diffusion from the shoot to the root tips. Previously, we showed that RBOHH is indispensable for the induction of aerenchyma formation in rice (Oryza sativa) roots under low-oxygen conditions. Here, we showed that CDPK5 and CDPK13 localize to the plasma membrane where RBOHH functions. Mutation analysis of the serine at residues 92 and 107 of RBOHH revealed that these residues are required for CDPK5- and CDPK13-mediated activation of ROS production. The requirement of Ca2+ for CDPK5 and CDPK13 function was confirmed using in vitro kinase assays. CRISPR/Cas9-based mutagenesis of CDPK5 and/or CDPK13 revealed that the double knockout almost completely suppressed inducible aerenchyma formation, whereas the effects were limited in the single knockout of either CDPK5 or CDPK13. Interestingly, the double knockout almost suppressed the induction of adventitious root formation, which is widely conserved in vascular plants, under low-oxygen conditions. Our results suggest that CDPKs are essential for the acclimation of rice to low-oxygen conditions and also for many other plant species conserving CDPK-targeted phosphorylation sites in RBOH homologs.

Indexed as

AcclimatizationOryzaOxygenPlant ProteinsProtein KinasesReactive Oxygen SpeciesCalcium-Calmodulin-Dependent Protein KinasesCell MembraneGene Expression Regulation, PlantNADPH OxidasesPlant RootsCalcium-Calmodulin-Dependent Protein KinasesNADPH OxidasesOxygenPlant ProteinsProtein KinasesReactive Oxygen Speciessuperoxide-forming enzyme

Identifiers

PMID38849987
PMCPMC11663579

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.