Evidence map›Paper›PMID 38849775›Full record

ArticleBMC microbiology2024

Complete genome sequence of Bacillus velezensis strain Ag109, a biocontrol agent against plant-parasitic nematodes and Sclerotinia sclerotiorum.

Silas Mian, Andressa Cristina Zamboni Machado, Rodrigo Thibes Hoshino, Mirela Mosela, Allan Yukio Higashi, Gabriel Danilo Shimizu, Gustavo Manoel Teixeira, Alison Fernando Nogueira, Renata Mussoi Giacomin, Luriam Aparecida Brandão Ribeiro and 3 more

Abstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. DecodingPlants (Basel, Switzerland) · 2026
    Review
  2. Review
  3. Article
  4. Frontiers in plant science · 2025
    Article
  5. The role ofFrontiers in microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Silas MianAgronomy Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Andressa Cristina Zamboni MachadoNematology Department, Instituto Agronômico Do Paraná, Londrina, Paraná, 86047-902, Brazil.
Rodrigo Thibes HoshinoAgronomy Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Mirela MoselaMicrobiology Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Allan Yukio HigashiAgronomy Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Gabriel Danilo ShimizuAgronomy Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Gustavo Manoel TeixeiraMicrobiology Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Alison Fernando NogueiraAgronomy Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Renata Mussoi GiacominBiology Department, Universidade Estadual Do Centro Oeste, Guarapuava, Paraná, 85015-430, Brazil.
Luriam Aparecida Brandão RibeiroNematology Department, Instituto Agronômico Do Paraná, Londrina, Paraná, 86047-902, Brazil.
Alessandra KoltunCenter for Molecular Biology and Genetic Engineering, UNICAMP, Campinas, São Paulo, 13083-875, Brazil.
Rafael de AssisAgronomy Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil.
Leandro Simões Azeredo GonçalvesAgronomy Department, Universidade Estadual de Londrina, Londrina, Paraná, 86097-570, Brazil. leandrosag@uel.br.ORCID http://orcid.org/0000-0001-9700-9375

Funding

Coordination for the Improvement of Higher Education Personnel (CAPES) 01
6 · The paper itself

Abstract

Soybean is the main oilseed cultivated worldwide. Even though Brazil is the world's largest producer and exporter of soybean, its production is severely limited by biotic factors. Soil borne diseases are the most damaging biotic stressors since they significantly reduce yield and are challenging to manage. In this context, the present study aimed to evaluate the potential of a bacterial strain (Ag109) as a biocontrol agent for different soil pathogens (nematodes and fungi) of soybean. In addition, the genome of Ag109 was wholly sequenced and genes related to secondary metabolite production and plant growth promotion were mined. Ag109 showed nematode control in soybean and controlled 69 and 45% of the populations of Meloidogyne javanica and Pratylenchus brachyurus, respectively. Regarding antifungal activity, these strains showed activity against Macrophomia phaseolina, Rhizoctonia solani, and Sclerotinia sclerotiorum. For S. sclerotiorum, this strain increased the number of healthy plants and root dry mass compared to the control (with inoculation). Based on the average nucleotide identity and digital DNA-DNA hybridization, this strain was identified as Bacillus velezensis. Diverse clusters of specific genes related to secondary metabolite biosynthesis and root growth promotion were identified, highlighting the potential of this strain to be used as a multifunctional microbial inoculant that acts as a biological control agent while promoting plant growth in soybean.

Indexed as

AscomycotaBacillusGenome, BacterialGlycine maxPlant DiseasesAnimalsAntibiosisBiological Control AgentsBrazilPest Control, BiologicalPhylogenyRhizoctoniaTylenchoideaWhole Genome SequencingBiological Control AgentsBiological controlGlycine max (L.) Merr.Meloidogyne javanicaPratylenchus brachyurusSclerotinia sclerotiorum

Identifiers

PMID38849775
PMCPMC11157790

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.