Evidence map›Paper›PMID 38849395›Full record

ArticleNature communications2024

ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers.

Yi Zhang, Guojia Xie, Ji-Eun Lee, Mohamad Zandian, Deepthi Sudarshan, Benjamin Estavoyer, Caroline Benz, Tiina Viita, Golareh Asgaritarghi, Catherine Lachance and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Yi Zhang *Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Guojia Xie *Laboratory of Endocrinology and Receptor Biology, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-8250-6157
Ji-Eun Lee *Laboratory of Endocrinology and Receptor Biology, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD, 20892, USA.ORCID http://orcid.org/0000-0002-3768-7016
Mohamad Zandian *Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.ORCID http://orcid.org/0000-0002-4967-6867
Deepthi Sudarshan *St-Patrick Research Group in Basic Oncology, Oncology Division of CHU de Québec-Université Laval Research, Laval University Cancer Research Center, Quebec City, QC, G1R 3S3, Canada.
Benjamin EstavoyerMaisonneuve-Rosemont Hospital Research Center, Montréal, QC, H1T 2M4, Canada.
Caroline BenzDepartment of Chemistry, BMC, Uppsala University, Uppsala, 75237, Sweden.ORCID http://orcid.org/0000-0002-5166-3598
Tiina ViitaSt-Patrick Research Group in Basic Oncology, Oncology Division of CHU de Québec-Université Laval Research, Laval University Cancer Research Center, Quebec City, QC, G1R 3S3, Canada.
Golareh AsgaritarghiSt-Patrick Research Group in Basic Oncology, Oncology Division of CHU de Québec-Université Laval Research, Laval University Cancer Research Center, Quebec City, QC, G1R 3S3, Canada.
Catherine LachanceSt-Patrick Research Group in Basic Oncology, Oncology Division of CHU de Québec-Université Laval Research, Laval University Cancer Research Center, Quebec City, QC, G1R 3S3, Canada.
Clémence MessmerMaisonneuve-Rosemont Hospital Research Center, Montréal, QC, H1T 2M4, Canada.
Leandro SimonettiDepartment of Chemistry, BMC, Uppsala University, Uppsala, 75237, Sweden.ORCID http://orcid.org/0000-0003-1283-9770
Vikrant Kumar SinhaDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA.
Jean-Philippe LambertSt-Patrick Research Group in Basic Oncology, Oncology Division of CHU de Québec-Université Laval Research, Laval University Cancer Research Center, Quebec City, QC, G1R 3S3, Canada.ORCID http://orcid.org/0000-0002-0833-1221
Yu-Wen ChenInstitute of Biomedical Sciences, Academia Sinica, Taipei, 11529, Taiwan, ROC.
Shu-Ping WangInstitute of Biomedical Sciences, Academia Sinica, Taipei, 11529, Taiwan, ROC.ORCID http://orcid.org/0000-0002-5895-1269
Ylva IvarssonDepartment of Chemistry, BMC, Uppsala University, Uppsala, 75237, Sweden.ORCID http://orcid.org/0000-0002-7081-3846
El Bachir AffarMaisonneuve-Rosemont Hospital Research Center, Montréal, QC, H1T 2M4, Canada.ORCID http://orcid.org/0000-0002-6374-3683
Jacques CôtéSt-Patrick Research Group in Basic Oncology, Oncology Division of CHU de Québec-Université Laval Research, Laval University Cancer Research Center, Quebec City, QC, G1R 3S3, Canada. jacques.cote@crchudequebec.ulaval.ca.ORCID http://orcid.org/0000-0001-6751-555X
Kai GeLaboratory of Endocrinology and Receptor Biology, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD, 20892, USA. kai.ge@nih.gov.
Tatiana G KutateladzeDepartment of Pharmacology, University of Colorado School of Medicine, Aurora, CO, 80045, USA. tatiana.kutateladze@cuanschutz.edu.ORCID http://orcid.org/0000-0001-7375-6990

Funding

Regulation of PPARgamma Expression and Adipogenesis by PTIP-Associated FactorsZIADK075003 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GE, KAI · 2009 to 2025
$17.6M
TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
Targeting acetylated histone H4 by MLL4R01AG067664 · NIA · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2021 to 2025
$2.1M
Molecular analysis of ASH1LR01CA252707 · NCI · UNIVERSITY OF COLORADO DENVER · PI TATIANA G KUTATELADZE · 2020 to 2026
$1.9M
The role of JADE in HBO complexesR01HL151334 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2023
$1.8M
Epigenetic mechanisms for regulation of p300R01GM135671 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2023
$1.4M
Interdomain crosstalk in MORC3R01GM125195 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2017 to 2021
$1.3M
p62 in Cancer: Mechanism and RegulationR00CA241301 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI ZHANG, YI · 2021 to 2023
$747k
Targeting acetylated histone H4 by MLL4R56AG067664 · NIA · UNIVERSITY OF COLORADO DENVER · PI KUTATELADZE, TATIANA G · 2020 to 2020
$512k
p62 in Cancer: Mechanism and RegulationK99CA241301 · NCI · UNIVERSITY OF COLORADO DENVER · PI ZHANG, YI · 2019 to 2020
$207k
NCI NIH HHS K99 CA241301NCI NIH HHS R00 CA241301NCI NIH HHS R01 CA252707NHLBI NIH HHS R01 HL151334NIA NIH HHS R01 AG067664NIA NIH HHS R56 AG067664NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R01 GM125195NIGMS NIH HHS R01 GM135671U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) AG067664
6 · The paper itself

Abstract

The human methyltransferase and transcriptional coactivator MLL4 and its paralog MLL3 are frequently mutated in cancer. MLL4 and MLL3 monomethylate histone H3K4 and contain a set of uncharacterized PHD fingers. Here, we report a novel function of the PHD2 and PHD3 (PHD2/3) fingers of MLL4 and MLL3 that bind to ASXL2, a component of the Polycomb repressive H2AK119 deubiquitinase (PR-DUB) complex. The structure of MLL4 PHD2/3 in complex with the MLL-binding helix (MBH) of ASXL2 and mutational analyses reveal the molecular mechanism which is conserved in homologous ASXL1 and ASXL3. The native interaction of the Trithorax MLL3/4 complexes with the PR-DUB complex in vivo depends solely on MBH of ASXL1/2, coupling the two histone modifying activities. ChIP-seq analysis in embryonic stem cells demonstrates that MBH of ASXL1/2 is required for the deubiquitinase BAP1 recruitment to MLL4-bound active enhancers. Our findings suggest an ASXL1/2-dependent functional link between the MLL3/4 and PR-DUB complexes.

Indexed as

DNA-Binding ProteinsHistone-Lysine N-MethyltransferaseProtein BindingRepressor ProteinsTumor Suppressor ProteinsUbiquitin ThiolesteraseAnimalsEnhancer Elements, GeneticHEK293 CellsHistonesHumansMicePHD Zinc FingersASXL1 protein, humanASXL2 protein, humanBAP1 protein, humanDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseHistonesKMT2C protein, humanMLL4 protein, humanRepressor ProteinsTumor Suppressor ProteinsUbiquitin Thiolesterase

Identifiers

PMID38849395
PMCPMC11161652

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.