Evidence map›Paper›PMID 38849354›Full record

ArticleNature communications2024

Protein translation rate determines neocortical neuron fate.

Ekaterina Borisova, Andrew G Newman, Marta Couce Iglesias, Rike Dannenberg, Theres Schaub, Bo Qin, Alexandra Rusanova, Marisa Brockmann, Janina Koch, Marieatou Daniels and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. A primer on copper biology in the brain.Neurobiology of disease · 2025
    Review
  7. Ribogenesis shaping the brain.Nature cell biology · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Ekaterina BorisovaInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Andrew G NewmanInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID http://orcid.org/0000-0002-0222-9162
Marta Couce IglesiasMax Planck Institute for Molecular Genetics, Ihnestraße 63-73, 14195, Berlin, Germany.ORCID http://orcid.org/0009-0001-3992-5508
Rike DannenbergInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Theres SchaubInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Bo QinMax Planck Institute for Molecular Genetics, Ihnestraße 63-73, 14195, Berlin, Germany.ORCID http://orcid.org/0000-0002-2503-7913
Alexandra RusanovaInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Marisa BrockmannInstitute of Neurophysiology, Charité-Universitätsmedizin Berlin, 10117, Berlin, Germany.
Janina KochInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Marieatou DanielsInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.
Paul TurkoInstitute of Integrative Neuroanatomy, Charité-Universitätsmedizin Berlin, 10117, Berlin, Germany.ORCID http://orcid.org/0000-0002-1305-6711
Olaf JahnNeuroproteomics Group, Department of Molecular Neurobiology, Max Planck Institute for Multidisciplinary Sciences, Hermann-Rein-Str. 3, 37075, Göttingen, Germany.ORCID http://orcid.org/0000-0002-3397-8924
David R KaplanProgram in Neurosciences and Mental Health, Hospital for Sick Children and Department of Molecular Genetics, University of Toronto, Toronto, Canada.
Marta RosárioInstitute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany.ORCID http://orcid.org/0000-0003-1101-7177
Takao IwawakiMedical Research Institute, Kanazawa Medical University, 1-1 Daigaku, Uchinada, Kahoku, Ishikawa, 920-0293, Japan.
Christian M T SpahnInstitute of Medical Physics and Biophysics, Charité-Universitätsmedizin Berlin, 10117, Berlin, Germany.ORCID http://orcid.org/0000-0002-2939-9487
Christian RosenmundInstitute of Neurophysiology, Charité-Universitätsmedizin Berlin, 10117, Berlin, Germany.ORCID http://orcid.org/0000-0002-3905-2444
David MeierhoferMax Planck Institute for Molecular Genetics, Ihnestraße 63-73, 14195, Berlin, Germany.
Matthew L KrausharMax Planck Institute for Molecular Genetics, Ihnestraße 63-73, 14195, Berlin, Germany.ORCID http://orcid.org/0000-0002-7359-0318
Victor Tarabykin *Institute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany. victor.tarabykin@charite.de.
Mateusz C Ambrozkiewicz *Institute of Cell Biology and Neurobiology, Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Charitéplatz 1, 10117, Berlin, Germany. mateusz-cyryl.ambrozkiewicz@charite.de.ORCID http://orcid.org/0000-0001-5225-5230

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 455114826Deutsche Forschungsgemeinschaft (German Research Foundation) 515247130Deutsche Forschungsgemeinschaft (German Research Foundation) 536563141Fritz Thyssen Stiftung (Fritz Thyssen Foundation) 10.23.2.003MNRussian Science Foundation (RSF) 21-65-00017
6 · The paper itself

Abstract

The mammalian neocortex comprises an enormous diversity regarding cell types, morphology, and connectivity. In this work, we discover a post-transcriptional mechanism of gene expression regulation, protein translation, as a determinant of cortical neuron identity. We find specific upregulation of protein synthesis in the progenitors of later-born neurons and show that translation rates and concomitantly protein half-lives are inherent features of cortical neuron subtypes. In a small molecule screening, we identify Ire1α as a regulator of Satb2 expression and neuronal polarity. In the developing brain, Ire1α regulates global translation rates, coordinates ribosome traffic, and the expression of eIF4A1. Furthermore, we demonstrate that the Satb2 mRNA translation requires eIF4A1 helicase activity towards its 5'-untranslated region. Altogether, we show that cortical neuron diversity is generated by mechanisms operating beyond gene transcription, with Ire1α-safeguarded proteostasis serving as an essential regulator of brain development.

Indexed as

Matrix Attachment Region Binding ProteinsNeocortexNeuronsProtein BiosynthesisProtein Serine-Threonine Kinases5' Untranslated RegionsAnimalsCell DifferentiationEndoribonucleasesGene Expression Regulation, DevelopmentalHumansMiceNeurogenesisProteostasisRibosomesRNA, Messenger5' Untranslated RegionsEndoribonucleasesMatrix Attachment Region Binding ProteinsProtein Serine-Threonine KinasesRNA, MessengerSATB2 protein, mouseTranscription Factors

Identifiers

PMID38849354
PMCPMC11161512

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.