Evidence map›Paper›PMID 38849340›Full record

ArticleNature communications2024

Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target.

Lucas Caldi Gomes, Sonja Hänzelmann, Fabian Hausmann, Robin Khatri, Sergio Oller, Mojan Parvaz, Laura Tzeplaeff, Laura Pasetto, Marie Gebelin, Melanie Ebbing and 24 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

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  11. Article
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  14. Extracellular Matrix Remodeling in Motor Neuron Diseases.International journal of molecular sciences · 2025
    Review
  15. Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors.

Lucas Caldi Gomes *Technical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany.ORCID http://orcid.org/0000-0003-4959-2169
Sonja Hänzelmann *III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID http://orcid.org/0000-0003-4953-0101
Fabian HausmannCenter for Biomedical AI, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID http://orcid.org/0000-0001-6110-5824
Robin KhatriCenter for Biomedical AI, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.ORCID http://orcid.org/0009-0006-5311-1718
Sergio OllerCenter for Biomedical AI, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Mojan ParvazTechnical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany.
Laura TzeplaeffTechnical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany.ORCID http://orcid.org/0009-0003-7643-3232
Laura PasettoResearch Center for ALS, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy.
Marie GebelinLaboratoire de Spectrométrie de Masse Bio-Organique, Université de Strasbourg, Infrastructure Nationale de Protéomique, Strasbourg, France.
Melanie EbbingCenter for Biomedical AI, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Constantin HolzapfelCenter for Biomedical AI, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Stefano Fabrizio ColumbroResearch Center for ALS, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy.
Serena ScozzariResearch Center for ALS, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy.
Johanna KnöferleTechnical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany.
Isabell CordtsTechnical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany.
Antonia F DemleitnerTechnical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany.ORCID http://orcid.org/0000-0001-9557-9243
Marcus DeschauerTechnical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany.
Claudia DufkeInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0001-5225-2443
Marc SturmInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-6552-8362
Qihui ZhouGerman Center for Neurodegenerative Diseases (DZNE), München, Germany.
Pavol ZelinaDepartment of Translational Neuroscience, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Emma Sudria-LopezDepartment of Translational Neuroscience, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Tobias B HaackInstitute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0001-6033-4836
Sebastian StrebFunctional Genomics Center Zürich, ETH Zürich and University of Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0002-9095-6596
Magdalena Kuzma-KozakiewiczDepartment of Neurology, Medical University of Warsaw, Warsaw, Poland.
Dieter EdbauerGerman Center for Neurodegenerative Diseases (DZNE), München, Germany.ORCID http://orcid.org/0000-0002-7186-4653
R Jeroen PasterkampDepartment of Translational Neuroscience, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-1631-6440
Endre LaczkoFunctional Genomics Center Zürich, ETH Zürich and University of Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0003-0271-3971
Hubert RehrauerFunctional Genomics Center Zürich, ETH Zürich and University of Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0001-7612-9394
Ralph SchlapbachFunctional Genomics Center Zürich, ETH Zürich and University of Zürich, Zürich, Switzerland.
Christine CarapitoLaboratoire de Spectrométrie de Masse Bio-Organique, Université de Strasbourg, Infrastructure Nationale de Protéomique, Strasbourg, France.ORCID http://orcid.org/0000-0002-0079-319X
Valentina BonettoResearch Center for ALS, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Milan, Italy.ORCID http://orcid.org/0000-0003-0456-2054
Stefan BonnCenter for Biomedical AI, University Medical Center Hamburg-Eppendorf, Hamburg, Germany. stefan.bonn@zmnh.uni-hamburg.de.ORCID http://orcid.org/0000-0003-4366-5662
Paul LingorTechnical University of Munich, School of Medicine, rechts der Isar Hospital, Clinical Department of Neurology, Munich, Germany. paul.lingor@tum.de.ORCID http://orcid.org/0000-0001-9362-7096

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01GM1917ADeutsche Forschungsgemeinschaft (German Research Foundation) SFB1192 PB8, and PC3
6 · The paper itself

Abstract

Amyotrophic lateral sclerosis (ALS) is a debilitating motor neuron disease and lacks effective disease-modifying treatments. This study utilizes a comprehensive multiomic approach to investigate the early and sex-specific molecular mechanisms underlying ALS. By analyzing the prefrontal cortex of 51 patients with sporadic ALS and 50 control subjects, alongside four transgenic mouse models (C9orf72-, SOD1-, TDP-43-, and FUS-ALS), we have uncovered significant molecular alterations associated with the disease. Here, we show that males exhibit more pronounced changes in molecular pathways compared to females. Our integrated analysis of transcriptomes, (phospho)proteomes, and miRNAomes also identified distinct ALS subclusters in humans, characterized by variations in immune response, extracellular matrix composition, mitochondrial function, and RNA processing. The molecular signatures of human subclusters were reflected in specific mouse models. Our study highlighted the mitogen-activated protein kinase (MAPK) pathway as an early disease mechanism. We further demonstrate that trametinib, a MAPK inhibitor, has potential therapeutic benefits in vitro and in vivo, particularly in females, suggesting a direction for developing targeted ALS treatments.

Indexed as

Amyotrophic Lateral SclerosisDisease Models, AnimalMAP Kinase Signaling SystemMice, TransgenicAgedAnimalsC9orf72 ProteinDNA-Binding ProteinsFemaleHumansMaleMiceMicroRNAsMiddle AgedPrefrontal CortexPyridonesC9orf72 ProteinDNA-Binding ProteinsFUS protein, humanMicroRNAsPyridonesPyrimidinonesRNA-Binding Protein FUSSOD1 protein, humanSuperoxide Dismutase-1TARDBP protein, humantrametinib

Identifiers

PMID38849340
PMCPMC11161513

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.