ArticleGenome research2024
DNA-m6A calling and integrated long-read epigenetic and genetic analysis with
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Article in Genome research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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44citing papers in PubMed
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Who cites it
44 citing papers in PubMed.
- A practical guide to studying genome function using single-molecule genomics.Nature reviews. Molecular cell biology · 2026Review
- Telomere variant sequences encode the genetic blueprint for allele-specific telomere length.Nature communications · 2026Article
- Long-read transcriptome analysis using IsoRanker for identifying pathogenic variants in Mendelian conditions.American journal of human genetics · 2026Article
- Haplotype-resolved DiMeLo-seq maps centromeric chromatin in a complete diploid human genome.Cell genomics · 2026Article
- Native yeast kinetochore structures identify an essential inner kinetochore interaction.Nature communications · 2026Article
- HPRC2: A human pangenome reference with near-complete coverage of common genetic variation.bioRxiv : the preprint server for biology · 2026Article
- Fiber-TEnCATS reveals haplotype-specific chromatin accessibility and DNA methylation at human L1HS loci.bioRxiv : the preprint server for biology · 2026Article
- Long-read sequencing technologies and bioinformatics: a new perspective for decoding DNA methylation modifications.Journal of translational medicine · 2026Review
- CLASH (Chromatin Loop Across-sample Score Harmonizer) quantifies the relative contributions of genetic variation, methylation, and CTCF occupancy on chromatin loop strength across individuals.bioRxiv : the preprint server for biology · 2026Article
- Single-molecule variation in telomeric sequence and structure across humans.bioRxiv : the preprint server for biology · 2026Article
- Z-Calling: a tool for A/Z (2,6-diaminopurine) base calling and dZ-DNA detection using PacBio HiFi reads.Communications biology · 2026Article
- Genome-wide classification of tumor-derived reads from bulk long-read sequencing.bioRxiv : the preprint server for biology · 2026Article
- Fully T2T pedigree assemblies reveal genetic stability and epigenetic plasticity of human centromeres across inheritance and cell-fate transitions.bioRxiv : the preprint server for biology · 2026Article
- Heterochromatin boundaries maintain centromere position, size and number.Nature structural & molecular biology · 2026Article
- Structural organization and function of telomeric chromatin.Nature cell biology · 2026Review
- Native yeast kinetochore structures identify an essential inner kinetochore interaction.bioRxiv : the preprint server for biology · 2026Article
- Chromosome-specific epigenetic control and transmission of ribosomal DNA arrays in Hominidae genomes.Cell genomics · 2025Article
- Mapping single-cell diploid chromatin fiber architectures using DAF-seq.Nature biotechnology · 2025Article
- Single-molecule views of chromatin accessibility and structure during photomorphogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- GREGoR: accelerating genomics for rare diseases.Nature · 2025Article
Corrections and comments
- Update of
Authors and funding
15 authors.
Anupama Jha *Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.ORCID 0000-0003-3029-2086
Stephanie C Bohaczuk *Division of Medical Genetics, University of Washington, Seattle, Washington 98195, USA.
Yizi MaoDivision of Medical Genetics, University of Washington, Seattle, Washington 98195, USA.
Jane RanchalisDivision of Medical Genetics, University of Washington, Seattle, Washington 98195, USA.
Benjamin J MalloryDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Alan T MinDepartment of Statistics, University of Washington, Seattle, Washington 98195, USA.
Morgan O HammDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Elliott SwansonDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Danilo DubocaninDepartment of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA.
Connor FinkbeinerDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Tony LiDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Dale WhittingtonDepartment of Medicinal Chemistry, University of Washington, Seattle, Washington 98195, USA.
William Stafford NobleDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.
Andrew B StergachisDepartment of Genome Sciences, University of Washington, Seattle, Washington 98195, USA; absterga@uw.edu mvollger@uw.edu.ORCID 0000-0002-1299-3674
Mitchell R VollgerDivision of Medical Genetics, University of Washington, Seattle, Washington 98195, USA; absterga@uw.edu mvollger@uw.edu.ORCID 0000-0002-8651-1615
Funding
Northwest Genomics Center for All of UsOT2OD002748 · OD · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN, JARVIK, GAIL PAIRITZ · 2018 to 2023
$65.4MSomatic Mosaicism across Human Tissues Program: Genome Characterization Centers (GCC SMaHT)UM1DA058220 · NIDA · SEATTLE CHILDREN'S HOSPITAL · PI JAMES T BENNETT, Evan Eichler · 2023 to 2026
$15.2MMedical Genetics Training GrantT32GM007454 · NIGMS · UNIVERSITY OF WASHINGTON · PI Gail Pairitz Jarvik, Andrew Ben Stergachis · 1985 to 2026
$6.9MInvestigating the contribution of non-coding genetic variation to rare disordersDP5OD029630 · OD · UNIVERSITY OF WASHINGTON · PI STERGACHIS, ANDREW BEN · 2020 to 2024
$1.9MDeep tensor genomic imputationR01HG011466 · NHGRI · UNIVERSITY OF WASHINGTON · PI NOBLE, WILLIAM STAFFORD · 2021 to 2024
$1.5MThe regulatory landscape of segmentally duplicated genes: Implications for human evolution and diseaseK99GM155552 · NIGMS · UNIVERSITY OF WASHINGTON · PI VOLLGER, MITCHELL R. · 2024 to 2025
$160kNHGRI NIH HHS R01 HG011466NIDA NIH HHS UM1 DA058220NIGMS NIH HHS K99 GM155552NIGMS NIH HHS T32 GM007454NIH HHS DP5 OD029630NIH HHS OT2 OD002748
Abstract
Long-read DNA sequencing has recently emerged as a powerful tool for studying both genetic and epigenetic architectures at single-molecule and single-nucleotide resolution. Long-read epigenetic studies encompass both the direct identification of native cytosine methylation and the identification of exogenously placed DNA
Indexed as
Epigenesis, GeneticSequence Analysis, DNAAdenineDNADNA MethylationEpigenomicsHigh-Throughput Nucleotide SequencingHumansSoftwareAdenineDNA
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Read underepoch 390
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.