Evidence map›Paper›PMID 38848691›Full record

ArticleMolecular cell2024

Depletion of cap-binding protein eIF4E dysregulates amino acid metabolic gene expression.

Paige D Diamond, Nicholas J McGlincy, Nicholas T Ingolia

Abstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. NNature · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Paige D DiamondDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Nicholas J McGlincyDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Nicholas T IngoliaDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA; Center for Computational Biology and California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720, USA. Electronic address: ingolia@berkeley.edu.

Funding

Molecular Basis and Cellular Roles of Translational RegulationDP2CA195768 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI INGOLIA, NICHOLAS T · 2014 to 2014
$2.4M
Functional genomics of the dynamic molecular network controlling mRNA translation and decayR01GM130996 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI INGOLIA, NICHOLAS T · 2019 to 2022
$1.2M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NCI NIH HHS DP2 CA195768NIGMS NIH HHS R01 GM130996NIH HHS S10 OD018174
6 · The paper itself

Abstract

Protein synthesis is metabolically costly and must be tightly coordinated with changing cellular needs and nutrient availability. The cap-binding protein eIF4E makes the earliest contact between mRNAs and the translation machinery, offering a key regulatory nexus. We acutely depleted this essential protein and found surprisingly modest effects on cell growth and recovery of protein synthesis. Paradoxically, impaired protein biosynthesis upregulated genes involved in the catabolism of aromatic amino acids simultaneously with the induction of the amino acid biosynthetic regulon driven by the integrated stress response factor GCN4. We further identified the translational control of Pho85 cyclin 5 (PCL5), a negative regulator of Gcn4, that provides a consistent protein-to-mRNA ratio under varied translation environments. This regulation depended in part on a uniquely long poly(A) tract in the PCL5 5' UTR and poly(A) binding protein. Collectively, these results highlight how eIF4E connects protein synthesis to metabolic gene regulation, uncovering mechanisms controlling translation during environmental challenges.

Indexed as

Amino AcidsEukaryotic Initiation Factor-4EGene Expression Regulation, FungalProtein BiosynthesisSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins5' Untranslated RegionsBasic-Leucine Zipper Transcription FactorsCyclinsPoly(A)-Binding ProteinsRNA, Messenger5' Untranslated RegionsAmino AcidsBasic-Leucine Zipper Transcription FactorsCyclinsEukaryotic Initiation Factor-4EGCN4 protein, S cerevisiaePoly(A)-Binding ProteinsRNA, MessengerSaccharomyces cerevisiae Proteinsamino acid metabolismcap-binding proteintranslation

Identifiers

PMID38848691
PMCPMC11416130

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.