Evidence map›Paper›PMID 38848364›Full record

ArticleScience advances2024

Genome wide nucleosome landscape shapes 3D chromatin organization.

Shah Fouziya, Nils Krietenstein, Ulfat Syed Mir, Jakub Mieczkowski, Masood A Khan, Aemon Baba, Mohmmad Abaas Dar, Mohammad Altaf, Ajazul H Wani

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Transcription and Three-Dimensional Genome Organization: Cause, Consequence, or Coordination?BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shah FouziyaDepartment of Biotechnology, School of Biological Sciences, University of Kashmir, Srinagar, J&K, 190006, India.ORCID 0009-0002-3473-6000
Nils KrietensteinNovo Nordisk Foundation Center for Protein Research, University of Copenhagen, Denmark.ORCID 0000-0003-2519-6305
Ulfat Syed MirCentre for Interdisciplinary Research and Innovations, University of Kashmir, Srinagar, J&K, 190006, India.ORCID 0009-0007-0502-1475
Jakub MieczkowskiInternational Research Agenda 3P Medicine Laboratory, Medical University of Gdansk, Gdansk, Poland.ORCID 0000-0002-2091-012X
Masood A KhanDepartment of Biotechnology, School of Biological Sciences, University of Kashmir, Srinagar, J&K, 190006, India.ORCID 0009-0006-1395-2272
Aemon BabaDepartment of Biotechnology, School of Biological Sciences, University of Kashmir, Srinagar, J&K, 190006, India.ORCID 0009-0004-0938-1505
Mohmmad Abaas DarDepartment of Biotechnology, School of Biological Sciences, University of Kashmir, Srinagar, J&K, 190006, India.
Mohammad AltafCentre for Interdisciplinary Research and Innovations, University of Kashmir, Srinagar, J&K, 190006, India.ORCID 0000-0002-0489-2128
Ajazul H WaniDepartment of Biotechnology, School of Biological Sciences, University of Kashmir, Srinagar, J&K, 190006, India.ORCID 0000-0002-0903-363X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hierarchical chromatin organization begins with formation of nucleosomes, which fold into chromatin domains punctuated by boundaries and ultimately chromosomes. In a hierarchal organization, lower levels shape higher levels. However, the dependence of higher-order 3D chromatin organization on the nucleosome-level organization has not been studied in cells. We investigated the relationship between nucleosome-level organization and higher-order chromatin organization by perturbing nucleosomes across the genome by deleting

Indexed as

ChromatinChromatin Assembly and DisassemblyGenome, FungalNucleosomesSaccharomyces cerevisiaeAdenosine TriphosphatasesDNA-Binding ProteinsSaccharomyces cerevisiae ProteinsTranscription FactorsAdenosine TriphosphatasesCHD1 protein, S cerevisiaeChromatinDNA-Binding ProteinsISWI proteinNucleosomesSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID38848364
PMCPMC11160460

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.