Evidence map›Paper›PMID 38848342›Full record

ArticleScience immunology2024

Human γδ T cells in diverse tissues exhibit site-specific maturation dynamics across the life span.

Joshua I Gray, Daniel P Caron, Steven B Wells, Rebecca Guyer, Peter Szabo, Daniel Rainbow, Can Ergen, Ksenia Rybkina, Marissa C Bradley, Rei Matsumoto and 11 more

Abstract read
In one paragraph

Article in Science immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Article
  3. γδ T cells in colorectal and liver cancer.Nature reviews. Gastroenterology & hepatology · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Viscoelastic Niches Shape γδ T-Cell Phenotype and Effector Function.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Oligoclonal expansion of atypical Vδ2Nature communications · 2026
    Article
  14. Immune development in early life.Nature immunology · 2026
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Joshua I GrayDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0003-2796-5470
Daniel P CaronDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0002-1500-8713
Steven B WellsDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0001-5428-0683
Rebecca GuyerDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032 USA.
Peter SzaboDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0003-1603-761X
Daniel RainbowDepartment of Clinical Neurosciences, University of Cambridge, Cambridge, UK.ORCID 0000-0003-4931-3289
Can ErgenDepartment of Electrical Engineering and Computer Science and Center for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-3096-2927
Ksenia RybkinaDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0002-1314-0382
Marissa C BradleyDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032 USA.
Rei MatsumotoDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032 USA.
Kalpana PetheDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032 USA.ORCID 0000-0001-5318-1886
Masaru KubotaDepartment of Surgery, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0002-4095-738X
Sarah TeichmannWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.ORCID 0000-0002-6294-6366
Joanne JonesDepartment of Clinical Neurosciences, University of Cambridge, Cambridge, UK.ORCID 0000-0003-4974-1371
Nir YosefDepartment of Electrical Engineering and Computer Science and Center for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0001-9004-1225
Mark AtkinsonDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0001-8489-4782
Maigan BruskoDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-4331-2202
Todd M BruskoDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0003-2878-9296
Thomas J ConnorsDepartment of Pediatrics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032 USA.ORCID 0000-0002-0199-7733
Peter A SimsDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0002-3921-4837
Donna L FarberDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032 USA.ORCID 0000-0001-8236-9183

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Evolution of T cell immunity in blood and tissues over childhoodU01AI168634 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2022 to 2026
$4.1M
Development of lung T cell responses in infant respiratory immunityU01AI100119 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2017 to 2021
$3.9M
Development of lung T cell responses in infant respiratory immunityR01AI100119 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2012 to 2016
$2.6M
Columbia University Graduate Training Program in Microbiology and ImmunologyT32AI106711 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Nicholas Arpaia, Uttiya Basu · 2014 to 2026
$2.1M
Development of Localized T Cell Immunity in Pediatric Respiratory Tract InfectionK23AI141686 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CONNORS, THOMAS · 2019 to 2023
$973k
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
Five-laser Aurora spectral flow cytometerS10OD030282 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CREUSOT, REMI J · 2022 to 2022
$361k
NCATS NIH HHS UL1 TR001873NCI NIH HHS P30 CA013696NCRR NIH HHS S10 RR027050NIAID NIH HHS K23 AI141686NIAID NIH HHS P01 AI106697NIAID NIH HHS R01 AI100119NIAID NIH HHS T32 AI106711NIAID NIH HHS U01 AI100119NIAID NIH HHS U01 AI168634NIH HHS S10 OD020056NIH HHS S10 OD030282
6 · The paper itself

Abstract

During ontogeny, γδ T cells emerge from the thymus and directly seed peripheral tissues for in situ immunity. However, their functional role in humans has largely been defined from blood. Here, we analyzed the phenotype, transcriptome, function, and repertoire of human γδ T cells in blood and mucosal and lymphoid tissues from 176 donors across the life span, revealing distinct profiles in children compared with adults. In early life, clonally diverse Vδ1 subsets predominate across blood and tissues, comprising naïve and differentiated effector and tissue repair functions, whereas cytolytic Vδ2 subsets populate blood, spleen, and lungs. With age, Vδ1 and Vδ2 subsets exhibit clonal expansions and elevated cytolytic signatures, which are disseminated across sites. In adults, Vδ2 cells predominate in blood, whereas Vδ1 cells are enriched across tissues and express residency profiles. Thus, antigenic exposures over childhood drive the functional evolution and tissue compartmentalization of γδ T cells, leading to age-dependent roles in immunity.

Indexed as

Receptors, Antigen, T-Cell, gamma-deltaAdolescentAdultAgedChildChild, PreschoolFemaleHumansInfantInfant, NewbornMaleMiddle AgedT-Lymphocyte SubsetsYoung AdultReceptors, Antigen, T-Cell, gamma-delta

Identifiers

PMID38848342
PMCPMC11425769

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.