Phylogenetic analysis and molecular genetic characteristics of West Nile virus lineage 2 isolates circulating in the Russian Federation.

A S Antonov, I M Shpak, D V Ustinov, M P Izhberdeeva, A N Guseva, A Y Galkina, N V Borodai, S K Udovichenko, A V Toporkov

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Article in Virus genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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0 citing papers in PubMed.

No citing paper in PubMed yet.

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5 · Who and what money

Authors and funding

9 authors.

A S AntonovFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia. libertad985@gmail.com.ORCID http://orcid.org/0000-0001-9342-7211

I M ShpakFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID http://orcid.org/0000-0001-6446-0274

D V UstinovFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID http://orcid.org/0000-0002-4516-731X

M P IzhberdeevaFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID http://orcid.org/0000-0002-2979-4452

A N GusevaFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID http://orcid.org/0009-0003-8433-1885

A Y GalkinaFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID http://orcid.org/0000-0003-1910-3731

N V BorodaiFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID http://orcid.org/0000-0002-2076-5276

S K UdovichenkoFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID http://orcid.org/0000-0001-8682-1536

A V ToporkovFederal Government Health Institution "Volgograd Plague Control Research Institute" of Federal Service for Surveillance in the Sphere of Consumers Rights Protection and Human Wellbeing, Volgograd, 400066, Russia.ORCID https://orcid.org/0000-0002-3449-4657

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since its initial detection in Africa, the West Nile virus has disseminated widely across all continents, becoming endemic in numerous countries, including the Russian Federation. A substantial expansion of the West Nile virus range was observed in the European part of the Russian territory in 1999. In light of this epidemiological trend, research endeavours focusing on monitoring West Nile virus circulation activity in endemic regions of the country have gained paramount significance. A substantial dataset has been accrued from 2007 onwards regarding genomic variability and dissemination dynamics across the country throughout the entire monitoring period for the West Nile fever pathogen. The objective of this study was to characterise West Nile virus isolates that have been circulating in the Russian Federation and identify their molecular and genetic characteristics. A phylogenetic analysis of 55 complete genome sequences revealed that the West Nile virus population within the Russian Federation is genetically heterogeneous and is represented by four major clades. One of these clades is currently exhibiting extensive spread into new regions of the country.

Indexed as

Genetic VariationPhylogenyWest Nile FeverWest Nile virusAnimalsGenome, ViralHumansRussiaLineage 2Phylogenetic analysisSequencingWest Nile virus

Identifiers

PMID38847934

DOI10.1007/s11262-024-02079-2

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.