Evidence map›Paper›PMID 38847806›Full record

ArticleThe Journal of experimental medicine2024

Urine scRNAseq reveals new insights into the bladder tumor immune microenvironment.

Michelle A Tran, Dina Youssef, Sanjana Shroff, Disha Chowhan, Kristin G Beaumont, Robert Sebra, Reza Mehrazin, Peter Wiklund, Jenny J Lin, Amir Horowitz and 4 more

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. THY1Nature cell biology · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Malevolent alliance of MYBL2Journal for immunotherapy of cancer · 2025
    Article
  16. Dendritic cell maturation in cancer.Nature reviews. Cancer · 2025
    Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Michelle A TranDivision of Hematology and Medical Oncology, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-7153-0872
Dina YoussefDivision of Hematology and Medical Oncology, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0009-0009-2535-7886
Sanjana ShroffDepartment of Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-2839-0322
Disha ChowhanDepartment of Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0009-0005-6639-3788
Kristin G BeaumontDepartment of Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-3075-9977
Robert SebraDepartment of Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-9267-2426
Reza MehrazinDepartment of Urology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0009-0007-8648-0410
Peter WiklundDepartment of Urology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-6497-4697
Jenny J LinDepartment of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-7104-8480
Amir HorowitzDepartment of Immunology and Immunotherapy, The Marc and Jennifer Lipschultz Precision Immunology Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-3100-2810
Adam M Farkas *Division of Hematology and Medical Oncology, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-5813-9473
Matthew D Galsky *Division of Hematology and Medical Oncology, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-7655-9378
John P Sfakianos *Department of Urology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-3101-0266
Nina Bhardwaj *Division of Hematology and Medical Oncology, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-1865-4187

Funding

THE TISCH CANCER INSTITUTE - CANCER CENTER SUPPORT GRANTP30CA196521 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ramon E Parsons · 2015 to 2026
$35.4M
MOUNT SINAI MEDICAL SCIENTIST TRAINING PROGRAMT32GM007280 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI BARON, MARGARET H · 1985 to 2021
$22.8M
Mount Sinai Medical Scientist Training ProgramT32GM146636 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Talia H Swartz · 2022 to 2026
$6.8M
Dissecting myeloid cell-mediated resistance to immune checkpoint blockade in bladder cancerR01CA249175 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BHARDWAJ, NINA, GALSKY, MATTHEW · 2020 to 2024
$3.5M
Dissecting innate immune mechanisms of resistance to checkpoint blockade therapy in bladder cancerF30CA275269 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TRAN, MICHELLE ALYSSA · 2022 to 2025
$201k
Cancer Research Institute CRI4377Department of Defense TTSA CA181008NCI NIH HHS F30 CA275269NCI NIH HHS P30 CA196521NCI NIH HHS R01 CA249175NIGMS NIH HHS T32 GM007280NIGMS NIH HHS T32 GM146636NIH HHS 1R01CA249175
6 · The paper itself

Abstract

Due to bladder tumors' contact with urine, urine-derived cells (UDCs) may serve as a surrogate for monitoring the tumor microenvironment (TME) in bladder cancer (BC). However, the composition of UDCs and the extent to which they mirror the tumor remain poorly characterized. We generated the first single-cell RNA-sequencing of BC patient UDCs with matched tumor and peripheral blood mononuclear cells (PBMC). BC urine was more cellular than healthy donor (HD) urine, containing multiple immune populations including myeloid cells, CD4+ and CD8+ T cells, natural killer (NK) cells, B cells, and dendritic cells (DCs) in addition to tumor and stromal cells. Immune UDCs were transcriptionally more similar to tumor than blood. UDCs encompassed cytotoxic and activated CD4+ T cells, exhausted and tissue-resident memory CD8+ T cells, macrophages, germinal-center-like B cells, tissue-resident and adaptive NK cells, and regulatory DCs found in tumor but lacking or absent in blood. Our findings suggest BC UDCs may be surrogates for the TME and serve as therapeutic biomarkers.

Indexed as

Tumor MicroenvironmentUrinary Bladder NeoplasmsAgedCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesDendritic CellsFemaleHumansKiller Cells, NaturalLeukocytes, MononuclearMaleMiddle AgedRNA-SeqSingle-Cell AnalysisSingle-Cell Gene Expression Analysis

Identifiers

PMID38847806
PMCPMC11157455

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.