Evidence map›Paper›PMID 38846955›Full record

ArticleFrontiers in immunology2024

Integrated transcriptomic analysis reveals immune signatures distinguishing persistent versus resolving outcomes in MRSA bacteremia.

Rajesh Parmar, Harry Pickering, Richard Ahn, Maura Rossetti, David W Gjertson, Felicia Ruffin, Liana C Chan, Vance G Fowler, Michael R Yeaman, Elaine F Reed and 1 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Rajesh ParmarDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, United States.
Harry PickeringDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, United States.
Richard AhnDepartment of Microbiology, Immunology, & Molecular Genetics, University of California Los Angeles, Los Angeles, CA, United States.
Maura RossettiDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, United States.
David W GjertsonDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, United States.
Felicia RuffinDivision of Infectious Diseases, Duke University, Durham, NC, United States.
Liana C ChanDepartment of Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, United States.
Vance G Fowler *Division of Infectious Diseases, Duke University, Durham, NC, United States.
Michael R Yeaman *Department of Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, United States.
Elaine F Reed *Department of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, United States.
MRSA Systems Immunology Group

Funding

Systems Epigenomics of Persistent Bloodstream InfectionU19AI172713 · NIAID · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI Monica Cappelletti · 2023 to 2026
$11.6M
Project 3: Mapping the Evolution of Chronic Transplant Injury in the Context of CMV InfectionU19AI128913 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BUNNAPRADIST, SUPHAMAI · 2017 to 2021
$11.2M
Systems Immunolobiology of Antibiotic-Persistent MRSA InfectionU01AI124319 · NIAID · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI YEAMAN, MICHAEL R · 2016 to 2020
$10.1M
Host Susceptibility to S. aureusR01AI068804 · NIAID · DUKE UNIVERSITY · PI FOWLER, VANCE G. · 2007 to 2016
$6.9M
Mitigating Resistance & Virulence in MRSAR33AI111661 · NIAID · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI YEAMAN, MICHAEL R · 2016 to 2018
$1.2M
ROLE OF ATP-BINDING CASSETTE TRANSPORTERS IN INNATE INTESTINAL DEFENSER15AI072713 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI NEUDECK, BRIEN · 2007 to 2007
$219k
NIAID NIH HHS R01 AI068804NIAID NIH HHS R15 AI072713NIAID NIH HHS R33 AI111661NIAID NIH HHS U01 AI124319NIAID NIH HHS U19 AI128913NIAID NIH HHS U19 AI172713NIAID NIH HHS U19 AI72713
6 · The paper itself

Abstract

Introduction: Methods: Whole-blood transcriptomes of propensity-matched PB (n=28) versus RB (n=30) patients treated with vancomycin were compared in one independent training patient cohort. Gene expression (GE) modules were analyzed and prioritized relative to host IL-10 cytokine levels and DNA methyltransferase-3A ( Results: Differential expression of T and B lymphocyte gene expression early in MRSA bacteremia discriminated RB from PB outcomes. Significant increases in effector T and B cell signaling pathways correlated with RB, lower IL-10 cytokine levels and Discussion: Collectively, the present findings indicate that human PB involves dysregulated immunity characterized by impaired T and B cell responses associated with excessive IL-10 expression in context of the

Indexed as

BacteremiaGene Expression ProfilingMethicillin-Resistant Staphylococcus aureusStaphylococcal InfectionsTranscriptomeAdultAgedAnti-Bacterial AgentsDNA Methyltransferase 3AFemaleHumansInterleukin-10MaleMiddle AgedAnti-Bacterial AgentsDNA Methyltransferase 3ADNMT3A protein, humanInterleukin-10host immunityMRSApersistenceproteomicsStaphylococcus aureustranscriptomics

Identifiers

PMID38846955
PMCPMC11153731

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.