Evidence map›Paper›PMID 38846772›Full record

ArticleJournal of applied crystallography2024

Ray-tracing analytical absorption correction for X-ray crystallography based on tomographic reconstructions.

Yishun Lu, Ramona Duman, James Beilsten-Edmands, Graeme Winter, Mark Basham, Gwyndaf Evans, Jos J A G Kamps, Allen M Orville, Hok-Sau Kwong, Konstantinos Beis and 2 more

Abstract read
In one paragraph

Article in Journal of applied crystallography, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Convergent-beam X-ray crystallography.Journal of applied crystallography · 2026
    Article
  2. Article
  3. Journal of applied crystallography · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yishun LuOxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, Oxford OX1 3QG, United Kingdom.ORCID https://orcid.org/0000-0003-2345-4470
Ramona DumanDiamond Light Source, Harwell Science & Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID https://orcid.org/0000-0002-3566-8698
James Beilsten-EdmandsDiamond Light Source, Harwell Science & Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID https://orcid.org/0000-0003-1565-5328
Graeme WinterDiamond Light Source, Harwell Science & Innovation Campus, Didcot OX11 0DE, United Kingdom.
Mark BashamRosalind Franklin Institute, Harwell Science & Innovation Campus, Didcot OX11 0QX, United Kingdom.ORCID https://orcid.org/0000-0002-8438-1415
Gwyndaf EvansDiamond Light Source, Harwell Science & Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID https://orcid.org/0000-0002-6079-2201
Jos J A G KampsDiamond Light Source, Harwell Science & Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID https://orcid.org/0000-0001-8646-1796
Allen M OrvilleDiamond Light Source, Harwell Science & Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID https://orcid.org/0000-0002-7803-1777
Hok-Sau KwongRutherford Appleton Laboratory, Research Complex at Harwell, Didcot OX11 0FA, United Kingdom.
Konstantinos BeisRutherford Appleton Laboratory, Research Complex at Harwell, Didcot OX11 0FA, United Kingdom.ORCID https://orcid.org/0000-0001-5727-4721
Wesley ArmourOxford e-Research Centre, Department of Engineering Science, University of Oxford, 7 Keble Road, Oxford OX1 3QG, United Kingdom.
Armin WagnerDiamond Light Source, Harwell Science & Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID https://orcid.org/0000-0001-8995-7324

Funding

Wellcome Trust 210734/Z/18/Z
6 · The paper itself

Abstract

Processing of single-crystal X-ray diffraction data from area detectors can be separated into two steps. First, raw intensities are obtained by integration of the diffraction images, and then data correction and reduction are performed to determine structure-factor amplitudes and their uncertainties. The second step considers the diffraction geometry, sample illumination, decay, absorption and other effects. While absorption is only a minor effect in standard macromolecular crystallography (MX), it can become the largest source of uncertainty for experiments performed at long wavelengths. Current software packages for MX typically employ empirical models to correct for the effects of absorption, with the corrections determined through the procedure of minimizing the differences in intensities between symmetry-equivalent reflections; these models are well suited to capturing smoothly varying experimental effects. However, for very long wavelengths, empirical methods become an unreliable approach to model strong absorption effects with high fidelity. This problem is particularly acute when data multiplicity is low. This paper presents an analytical absorption correction strategy (implemented in new software

Indexed as

absorption correctionlong-wavelength crystallographyray tracingX-ray tomography

Identifiers

PMID38846772
PMCPMC11151674

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.